Chromobacterium violaceum: CV_1329
Help
Entry
CV_1329 CDS
T00147
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
cvi
Chromobacterium violaceum
Pathway
cvi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
CV_1329 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cvi03400
]
CV_1329 (sbcB)
Enzymes [BR:
cvi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
CV_1329 (sbcB)
DNA repair and recombination proteins [BR:
cvi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
CV_1329 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CV_1329 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CV_1329 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
TMP_4
Motif
Other DBs
NCBI-ProteinID:
AAQ59004
LNCC_Brazil:
CV1329
UniProt:
Q7NYE5
LinkDB
All DBs
Position
complement(1398832..1400250)
Genome browser
AA seq
472 aa
AA seq
DB search
MSNHTFFWHDYETFGAVPRQDRPSQFAGIRTDAELNEIGEPVMLYCRPAPDYLPTLQACL
LTGITPQLCRQQGVAEHEFAGVIERELATPATIGVGYNSLRFDDEVTRFLFWRNLIDPYA
REWQNHCGRWDLLDLVRATYALRPDGIVWPKHEDGRTSFKLEHLSAANGLAHASAHDALS
DVRATIALARLIRQRQPKLFDYYLTLRKKDAVKVQLSLHDPKPVLHVSGMYGVERGNLAV
VWPLAAHPTNANEVIVWDLAHDPAELRGLSADDIRQRMFTRADELPEGVARLPVKTIHIN
KSPFVVANLKALGDDNAARWGMDLAAIHRHAEAARALPDLSALWRRVYQREAGEPQDVDQ
NLYGGFVSNNDRKALQKMRRLSAAQLAGEMALFEDPQLAELLFRYRARNFPDTLSGDEQK
RWKAWCQARLAQSWPAFQQELAELRAGELTDGQRNLLQQVADYAASLQASLA
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgtccaatcacacgttcttctggcacgactacgaaaccttcggcgccgtgccgcgccag
gaccgcccgtcgcagttcgccggcatccgcaccgacgccgagctgaacgagatcggcgag
ccggtgatgctgtactgccgccccgcgcccgattacctgcccacgctgcaggcctgcctg
ctgaccggcatcacgccgcagctgtgccggcagcagggcgtggcggaacacgagttcgcc
ggcgtgatcgagcgcgagctggccacgcccgccaccataggcgtcggctacaactcgctg
cgcttcgacgacgaggtcacccgcttcctgttctggcgcaacctgatcgacccctacgcc
cgcgaatggcagaaccactgcggccgctgggacctgctggacctggtccgcgccacctac
gcgctgcgccccgacggcatcgtctggcccaagcacgaggacggccggaccagcttcaag
ctggagcacctgtccgccgccaacgggctggcgcatgcgtcggcccacgacgcgttgtcc
gacgtgcgcgccaccatcgcgctggcgcggctgatccgccagcgccagcccaagctgttc
gactactacctgacgctgcgcaagaaggacgcggtcaaggtgcagctgtcgctgcacgac
cccaagccggtgctgcacgtctccggcatgtacggcgtggagcgcggcaatctggccgtg
gtctggccgctggccgcccacccgaccaatgccaacgaggtcatcgtctgggacctggcc
cacgacccggccgaactgcgcggcctctccgccgacgacatccgccagcgcatgttcacg
cgcgccgacgaactgcccgaaggcgtggcgcggctgccggtcaagaccatccacatcaac
aagtcgccgttcgtggtggccaatctgaaggcgctgggcgacgacaacgccgcgcgctgg
ggcatggacctggccgccatccaccgccacgccgaggccgcccgcgcgctgccagacctg
tcggcgctgtggcgccgcgtttatcaacgcgaagccggcgagccgcaagatgtggatcaa
aacctctacggcggcttcgtctccaacaacgaccgcaaggcgctgcagaaaatgcgccgg
ctgtccgccgcccagttggccggcgagatggcgctgttcgaggacccgcagctggccgag
ctgctgttccgctaccgcgcccgcaacttcccggacaccttgtccggcgacgagcaaaag
cgctggaaagcctggtgccaggccaggctggcccaatcctggccggcgttccagcaggag
ctggccgaactgcgggccggcgaactgaccgatggccagcgcaacctgctgcaacaagtg
gccgactacgccgccagtcttcaggccagtctggcctga
DBGET
integrated database retrieval system