Chromobacterium violaceum: CV_1820
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Entry
CV_1820 CDS
T00147
Name
(GenBank) probable ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cvi
Chromobacterium violaceum
Pathway
cvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CV_1820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvi03019
]
CV_1820
03009 Ribosome biogenesis [BR:
cvi03009
]
CV_1820
Enzymes [BR:
cvi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CV_1820
Messenger RNA biogenesis [BR:
cvi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CV_1820
Ribosome biogenesis [BR:
cvi03009
]
Prokaryotic type
rRNA processing factors
CV_1820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AAQ59494
LNCC_Brazil:
CV1820
UniProt:
Q7NX09
LinkDB
All DBs
Position
1975805..1978750
Genome browser
AA seq
981 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQKLVDLDIETVGKEQRKGNIYKGVITRIEPSLEACFVDY
GTERHGFLPFKEVSRSYFQGYDGGRPRIQDVLREGMEVVVQVEKDERGNKGAALTTYISL
AGRYLVLMPNNPRGGGVSRRIEGEERQELKDLLSQLEVPHGMSLIARTAGIGRNLEELQW
DLGYLMQLWRAIEGAAGAQSAPFLILQEGSLVIRAIRDYFHPDIGEVLIDTEEIHDQARQ
FMSHVMPNMLSRVKLYKDHVPLFSRFQIEHQIETAFSRSVQLPSGGAIVIDHTEALVSID
VNSARATKGADIEETAVKTNLEAAEEIARQLRLRDLGGLVVIDFIDMENPKNQRDVENRL
RDVLKHDRARVQMGKLSRFGLLELSRQRLQPSLGETSHEPCPRCHGIGFIRGTESSALHI
LRIIQEEAMKENTGAVHAQVPVDVATFLLNEKRAEIHSIEERLDVDVVLIPNIHLETPHY
KIVRVRHDDVAELGEAPSYTRVEVQEEDVITNFGQEKPKVERQEAAVKGITPQQPAPSAS
VSAAAKPVEQGGLFAGIAAWFKGLFAEPEKAPVQDAKKKPVQSSSRGNEQRGNRQRPHER
RTGGQARREHEQRRNGQQDEGKSRRPDERKDAERAERADRPERKEAPSRDREERNEQPRE
RGSRRREREGREPREPKEVREQAPREERVSEKAEKQDKPQQEPRRRQAPAAAPAEAVEKP
LHEELRLDAEGEQAEQERGERRRRRSRRDRQRDTSKAQQDGAVEGVSESPAEVPVAEAAG
AAVAVAVAAVAVEAAVEAKPQAEALLEAEAKPVAPAVEPVRTEVVAEAVAVEPEAPVVVA
VVEPQPEAVVVAPAVVVEAEQAPVAAEPAVVAEPVVETLAAQAVVEAAPVAEAPAAVDAP
VADEQLAEPVVVQAESKPAAVEAKPLDLGGLVMVATKPATEQAAAASEPELPQGPRRRDV
VVAEAAAVEPAQLVQVETRNG
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttgttcaacgcgacgcaggccgaagagctgcgcgtcgcgattgtcgac
gggcagaagctcgtcgatctcgatatcgagaccgtaggcaaggaacagcgcaagggcaat
atctacaagggtgtgatcacccggatcgagccttcgctggaagcctgcttcgtcgattac
ggcaccgagcgccacggcttcctgccgttcaaggaagtatcccgctcctatttccagggc
tatgacggcggccgtccgcgcattcaggacgtgctgcgcgaaggcatggaggtggtggtg
caggtggagaaggacgagcgcggcaacaagggcgcggcgctgaccacttacatcagcctg
gccggccgttatctggtgctgatgccgaacaacccgcgcggcggcggcgtgtctcgccgc
atcgagggcgaggagcgccaggagctgaaggatctgctgtcgcagctggaagtgccgcac
ggcatgagcctgatcgcccgcactgccggcatcggccgcaatctggaagagctgcagtgg
gacctcggttacctgatgcagctgtggcgcgccatcgaaggcgccgccggcgcccagtcc
gcgccgttcctgatcctgcaggaaggcagcctggtgatccgcgcgatccgcgactatttc
cacccggacatcggcgaggtgctgatcgacaccgaggaaatccacgaccaggcccgccag
ttcatgagccatgtgatgccgaacatgctgtcgcgtgtgaagctgtacaaggaccatgtg
ccgctgttctcccgcttccagatcgagcaccagatcgaaaccgccttctcgcgcagcgtg
cagctgccgtccggcggcgccatcgtgatcgaccacaccgaagcgctggtgtccatcgac
gtgaactcggcccgcgccaccaagggcgccgacatcgaggaaaccgcggtcaagaccaac
ctggaagcggcggaagaaatcgcccgccagctgcgcctgcgcgacctgggcggcctggtg
gtgatcgacttcatcgacatggaaaacccgaagaaccagcgcgacgtggaaaatcgcctg
cgcgacgttctgaagcatgaccgcgcccgcgtgcagatgggcaagctgtcccgtttcggc
ctgttggagttgtcccgccagcgtctgcagccgtctctgggcgaaaccagccacgagcca
tgtccgcgctgccacggcatcggcttcatccgcggcaccgaatcgtcggcgctgcacatc
ctgcgcatcatccaggaagaggcgatgaaggaaaacaccggcgcggtgcacgcgcaggtg
ccggtcgacgtggccaccttcctgctgaacgagaagcgcgccgagatccattcgatcgag
gagcgtctggacgtggatgtggtgctgatccccaacatccatctggaaaccccgcattac
aagatcgtgcgcgtgcgccacgacgacgtggccgagctgggcgaggcgccgagctatacc
cgcgtcgaggtgcaggaagaggacgtgatcaccaattttggccaggaaaagccgaaggtg
gagcgccaggaagccgcggtcaagggcatcactccgcagcagccggcgcccagcgccagc
gtcagcgccgcggccaaaccggtcgagcagggcggcctgttcgcaggcatcgccgcctgg
ttcaagggcctgttcgccgagcctgaaaaggcgccggtccaggatgccaagaagaagccg
gtccagtcttcctcgcgcggcaacgagcagcgcggcaaccgccagcgtccgcatgagcgc
cgcaccggcggccaggcgcgccgcgagcacgagcagcgccgcaacggccagcaggacgaa
ggcaagtcccgtcgtccggacgagcgcaaggatgcggaacgcgccgagcgcgctgaccgt
cccgaacgcaaggaggcgccgagccgcgaccgcgaagagcgcaacgagcagccgcgcgag
cgcggcagccgtcgccgcgagcgcgaaggccgcgagccgcgcgagcccaaggaagtccgc
gaacaggcgccgcgcgaggagcgcgtgagcgagaaggccgaaaagcaggacaagccgcag
caggagccgcgtcgccgccaagcgccggcagccgctccggccgaggccgtcgagaagccg
ctgcacgaagagctgcgtctggatgccgaaggcgagcaggccgagcaggagcgcggcgag
cgccgccgccgccgcagccgccgcgaccgtcagcgcgatacctcgaaagcgcagcaggac
ggcgccgttgaaggcgtttccgagtccccggccgaagtcccggtggcagaagcggcgggc
gctgctgtggctgtagccgtggccgcggtagcggtggaggctgccgtcgaggccaaaccg
caagcggaagccctgctggaagccgaagccaaaccggtagcgccggcggtagagccggta
cggaccgaagttgtggctgaagccgtcgccgtcgaaccggaagctccggttgtcgtggcg
gtggtcgaaccgcaacccgaggccgtagtggttgcgccggccgtggtcgtcgaggcagag
caggcgccggttgccgccgagccggcggttgtcgccgagcccgtggtcgaaacgctggcc
gcccaagccgttgtcgaagccgctccggttgcggaggcgcctgccgcggtggatgctccg
gttgccgatgagcagcttgccgagccggttgttgtccaagccgagtccaagccggcggcg
gtggaagccaagccgctggatctgggcggcctggtcatggtggcgaccaagccggcgacc
gagcaggccgcggccgcgtccgagccggagctgccgcaaggcccgcgccgccgcgacgtc
gtcgtcgccgaggcggcggccgtggagccggcccaactggtgcaggtggagacccgcaac
ggttga
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