Chromobacterium violaceum: CV_2475
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Entry
CV_2475 CDS
T00147
Symbol
recJ
Name
(GenBank) exodeoxyribonuclease VII
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cvi
Chromobacterium violaceum
Pathway
cvi03410
Base excision repair
cvi03430
Mismatch repair
cvi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CV_2475 (recJ)
03430 Mismatch repair
CV_2475 (recJ)
03440 Homologous recombination
CV_2475 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cvi03400
]
CV_2475 (recJ)
DNA repair and recombination proteins [BR:
cvi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CV_2475 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CV_2475 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CV_2475 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
Glyco_trans_4_4
Motif
Other DBs
NCBI-ProteinID:
AAQ60146
LNCC_Brazil:
CV2475
UniProt:
Q7NV69
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All DBs
Position
complement(2662565..2664253)
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AA seq
562 aa
AA seq
DB search
MSQIVTREVPAELQQKLLGQGLTPLQARLYAARGIADSEELDYGLKGLLPYQKLKNVEAM
ASRLADAIAAKQRLLVVADYDADGATACAVAVKGLSMLGAIIGFIVPNRFEYGYGLTPEI
VELAAQKRPDIIVTVDNGIASVAGVEAAKARGIEVLVTDHHLPGDTLPEALIVNPNQPGC
EFPSKNLAGVGVMFYVLMALRVEMRRRGVFDEQTQPNLGVLLDLVALGTVADVVRLDRNN
RTLVENGLKRMRAGRMAPGIAALFRVAGRAHYKANTFDLGFTLGPRLNAAGRLDDMSLGI
ACLLASNEEQAMRLAQELDKLNRERRGIEAGMQDEALAALSGIDAGNRYTLSLYRDDWHQ
GVVGIVASRLKERFHRPAIVFAPGDEGEIKGSGRSIPGFHLRDALDLVYKRHPGLILKFG
GHAMAAGLSLDESRFAEFQQAFEAVARELLDEKQLTRMIETDGSLPARDLSLQLAETLAA
EVWGQGFPVPYFHDQFMVVNQKLVGDKHLKLRLAREGCEFDAMLFNHADWLPDRIQAVYQ
LIANEWQGRKELQVYLQHWAAA
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaaatcgttacccgcgaagtgcccgccgaactgcagcaaaagctgctcggccag
ggcctgaccccgctgcaggcgcggctgtacgccgcccgcggcatcgccgacagcgaagag
ctggactacggcctgaagggcctgctgccttatcaaaaactgaagaacgtcgaagcgatg
gccagccgcctggccgacgccatcgccgccaagcagcgcctgctggtggtcgccgattac
gacgccgacggcgccaccgcctgcgcggtggcggtgaagggcctgtccatgctgggcgcc
atcatcggcttcatcgtgcccaaccgcttcgagtacggttacggcctgacgccggaaatc
gtcgaactggcggcgcagaaacggccggacatcatcgtcaccgtcgacaacggcatcgcc
agcgtcgccggcgtggaagcggccaaggcgcgcggcatcgaggtgctggtcaccgaccac
cacttgccgggcgacaccttgccggaggcgctgatcgtcaaccccaaccagcccggctgc
gagtttccgtcgaaaaacctggccggcgtcggcgtgatgttctacgtgttgatggctttg
cgggtggagatgcgccggcgcggcgtgttcgacgagcagacccagcccaatctgggcgtg
ctgctggacctggtggcgctgggcacggtggcggacgtggtgcggctggaccgcaacaac
cgcacgctggtggaaaacggtctcaagcgcatgcgggccgggcggatggcgcccggcatc
gcggcattgttccgcgtcgccggccgcgcccactacaaggccaacaccttcgatctgggc
ttcaccctggggccgcggctgaatgccgccggccggctggacgacatgagcctgggcatc
gcctgcctgttggcgagcaatgaagagcaggcgatgcggctggcgcaggagctggacaag
ctcaaccgcgagcggcgcggcatcgaggccggcatgcaggacgaggcgctggcggcgctg
tccggcatcgacgccggcaaccgctacacgctcagcctgtaccgcgatgactggcaccag
ggcgtagtggggattgtggcttcccggttgaaggagcgcttccaccggccggccatcgtg
ttcgcgccgggcgacgagggcgagatcaagggttccggccgctcgattcccggcttccac
ctgcgcgacgcgctggacctggtctacaagcgccatccggggctgattctcaagttcggc
ggccacgcgatggcggccggcctgagcctggacgaaagccgcttcgccgagttccagcag
gcgttcgaggcggtggcgcgcgagctgctggacgagaagcagctgacccggatgatagaa
accgacggcagcctgccggcgcgcgacctcagcctgcaactggccgagacgctggcggct
gaggtgtgggggcaaggcttcccggtgccgtatttccacgaccagttcatggtggtgaat
cagaaactggtcggcgacaagcacctgaagctgcgcctggcgcgcgaaggctgcgaattc
gacgcgatgctgttcaaccatgccgactggctgccggaccgcatccaggcggtgtaccag
ctgatcgccaacgaatggcagggacgcaaggaactgcaggtctacctgcagcattgggcc
gcggcctga
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