Chromobacterium violaceum: CV_3045
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Entry
CV_3045 CDS
T00147
Symbol
himD
Name
(GenBank) integration host factor beta-subunit
KO
K05788
integration host factor subunit beta
Organism
cvi
Chromobacterium violaceum
Brite
KEGG Orthology (KO) [BR:
cvi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cvi03032
]
CV_3045 (himD)
03036 Chromosome and associated proteins [BR:
cvi03036
]
CV_3045 (himD)
03400 DNA repair and recombination proteins [BR:
cvi03400
]
CV_3045 (himD)
DNA replication proteins [BR:
cvi03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
CV_3045 (himD)
Chromosome and associated proteins [BR:
cvi03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
CV_3045 (himD)
DNA repair and recombination proteins [BR:
cvi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
CV_3045 (himD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
Motif
Other DBs
NCBI-ProteinID:
AAQ60714
LNCC_Brazil:
CV3045
UniProt:
Q7NTK9
LinkDB
All DBs
Position
complement(3322686..3323000)
Genome browser
AA seq
104 aa
AA seq
DB search
MTKSELIARLSERLAERNSQLVYKDAELAVKTILDAMANNLAQGSRIEIRGFGSFDLNYR
PPRVGRNPKSGASVSVPEKYVPHFKAGKELRERVDLSLLEQTQA
NT seq
315 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaatctgagctgatcgcgaggctgtcggaacgactggccgagcgcaattctcag
ttggtctacaaagatgctgagttggccgtcaagaccattctggacgcgatggccaacaac
ctggcgcagggaagccgcatcgagattcgcgggttcggtagcttcgatctgaactaccgt
ccgccgcgggtcggccgcaacccgaagtcgggcgccagcgtctcggttcctgagaaatac
gtgcctcatttcaaggccggcaaggaactgcgcgagcgcgtggacttgtcccttctggaa
cagacccaggcctga
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