Chromobacterium violaceum: CV_3523
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Entry
CV_3523 CDS
T00147
Name
(GenBank) probable ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cvi
Chromobacterium violaceum
Pathway
cvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CV_3523
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvi03019
]
CV_3523
03016 Transfer RNA biogenesis [BR:
cvi03016
]
CV_3523
Enzymes [BR:
cvi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CV_3523
Messenger RNA biogenesis [BR:
cvi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CV_3523
Transfer RNA biogenesis [BR:
cvi03016
]
Prokaryotic type
tRNA degradation factors
CV_3523
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
OB_PDCD11
DUF7372
Motif
Other DBs
NCBI-ProteinID:
AAQ61185
LNCC_Brazil:
CV3523
UniProt:
Q7NSA3
LinkDB
All DBs
Position
complement(3825895..3828762)
Genome browser
AA seq
955 aa
AA seq
DB search
MAQTSKKQKNSSLREQDPFLDREKLKYSNPLPSREFIMQILAEQGVPLFPDELAHMLSIR
RDEHAFFERRLRAMERDGEIIINRKGAVCVAQKLDLIRCKVSGHRDGYGFAMPDEGEGTG
TDIFLPEREMKKVMHGDRVMVRPSGVDRRGRQEGKIVEVLEHAVSKLVGRIQHERGVWVV
RPEDRRINHDILVEPGGDAGAKDGQVVMVDILQQPDAYHQPVGRVAEVLGNYADPGMEIE
IALRKHALPHRFPDDALAQAKATPKKVRKKDWTKDRVDLRDLPLVTIDGETARDFDDAVY
AEKLGKGYRLVVAIADVSFYVQPGDALDKEALDRGTSVYFPRRVIPMLPEALSNGICSLN
PDVERMCMVCDMQINAKGEVKKYKFYPAVMQSKARLTYNQVWDWLQNGTDHPMLPHVKDL
YALFKILLAARSKRGAIEFDSVETQMIFNDQGKIERIVPIVRNDAHRLIEECMLAANVCS
ADFLQKNGHKALYRVHEGPTEEKLENLRTYLRLVGLTLGGGDKPTAKDYGKLAEQIHGRP
DAPVLQTMLLRSMQQAVYTPDNNGHFGLAYEAYTHFTSPIRRYPDLLVHRAIKAVLKGVK
YKPGKWAQLGVHCSMTERRADDASRDVESWLKTYYMRDKVGEVFQGKISAVTSFGVFVLL
DDVYAEGLVHISELGKDYFHFKKDVQAIIGEKSGIQYRLGDALTVKVMGANLESSQVDFA
LVRDEPSAQAVVGAGAGAGVERAAPAKAGRRRRGKAGGAGDARAQPSEAIPAPDAVKAEP
AMSKPAGLPPAPKGRSHPTKPVTEQKPVAKTQTRQVAKPAEVRESAKKPDSRSGAAAQAP
ASAAKPVAAKGRSTSAKPTAEAKPASQPVVAQPAATKPVPASGDATAPAAGTARGRSARR
GRQDAAATQAPEAKQAAARGQAAKPPAVAPQAEPKARPQAASRKRGSAKRGADEA
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaacctcaaaaaagcaaaaaaactcttccctccgcgaacaggatccgttcctc
gacagggaaaaactcaaatattccaatcccttgcccagccgcgagttcatcatgcagatt
ctcgccgagcagggggtgccgctgtttccggacgaattggcccatatgctgtcgattcgc
cgcgacgagcatgccttctttgaacgccggctgcgcgcgatggagcgcgacggcgaaatc
atcatcaaccgcaagggcgcggtctgcgtcgcccagaagttggatctgatccgctgcaag
gtgtccggccatcgcgacggctacggtttcgccatgcccgacgagggagaaggcaccggc
accgacatcttcctccccgaacgggagatgaagaaagtgatgcacggcgaccgcgtgatg
gtgcggccgtccggcgtcgaccgccgcggcaggcaggaaggcaagatcgtcgaggtgctg
gagcacgcggtgagtaagctggtcggccgcatccagcacgagcgcggcgtgtgggtggtg
cggccggaagaccgccgcatcaaccacgacattttggtcgaaccgggcggcgacgcgggc
gccaaggacggccaggtggtgatggtggacatcctgcagcagccggatgcctaccaccag
cctgtcggcagggtggccgaagtgctgggcaactatgccgatccgggcatggagatcgaa
atcgcgctgcgcaagcacgcgctgccgcatcgctttccggacgatgccctggcccaggcc
aaggcgacgccgaagaaagtgcgcaagaaggattggaccaaggaccgcgtcgacctgcgc
gatttgccgctggtgacgatagacggcgagaccgcgcgcgacttcgacgacgcggtgtac
gccgaaaagctgggcaagggttaccgtctggtggtggcgatcgccgacgtcagcttctac
gtgcagccgggcgacgcgctggacaaggaagcgctggaccgcggcacctcggtttatttc
ccgcgccgggtgatcccgatgctgccggaggcgctgtccaacggcatctgttcgctgaat
cccgacgtcgagcgcatgtgcatggtctgcgacatgcagatcaacgccaagggcgaggtc
aagaagtataagttctatcccgcggtgatgcagtccaaagcccgcctcacctacaaccag
gtgtgggactggctgcagaacggcaccgatcatccgatgctgccgcatgtgaaggacttg
tacgctttgttcaagatcctgctggccgcgcgctccaagcgcggcgccatcgagttcgac
tcggtggagacgcagatgatcttcaacgatcagggcaagatcgagcgcatcgtccccatc
gtgcgcaacgacgcgcatcggctgatcgaggagtgcatgctggcggccaacgtctgctcg
gccgattttctgcagaaaaacggccacaaggcgctgtaccgcgtccatgaagggccgacc
gaggaaaagctggaaaacctgcgcacctatctgcggctggtcggcctgacgctgggcggc
ggcgacaagcccaccgccaaggattacggcaagctggcggagcagatccacggccgcccg
gacgcgccggtgctgcagaccatgttgctgcgctcgatgcagcaggcggtctacacgccg
gacaacaacggccatttcggcttggcttacgaggcttacacccatttcacctcgcccatc
cgccgctacccggacctgctggtccatcgcgcgatcaaggcggtgctcaagggcgtcaag
tacaagcccggcaagtgggcgcagctgggcgtgcattgctcgatgaccgagcgccgcgcc
gacgacgccagccgcgatgtcgagtcctggctgaaaacctattacatgcgcgacaaggta
ggcgaggtcttccaaggcaagatcagcgcggtcaccagcttcggcgtgttcgtgttgctg
gacgatgtctacgccgagggcctggtgcacatctccgaactgggcaaggactacttccat
ttcaagaaggacgttcaggccatcatcggcgagaagagcggcatccagtaccgtctgggt
gatgcgctgaccgtcaaggtgatgggcgccaatctggaaagctcccaggtcgatttcgcc
ctggtcagggacgagccatccgcccaggcggtggtgggagcgggagcgggagcgggagtg
gagcgggctgcgccagccaaggcgggacgccgtcgccgcggcaaggccggcggcgcgggc
gatgcgcgcgcgcagccgagcgaggccattccagctcctgatgcggtgaaggcggagccg
gctatgagcaagccggccggtttgccgccggcgccgaaggggcgcagccacccgaccaaa
ccggtgaccgagcaaaagcctgtcgccaagacgcagacgcggcaagtggccaagccggct
gaggtgcgggagtccgcgaagaagcccgactcaaggtccggcgccgcggcgcaagcgcct
gccagcgcggccaagcctgtcgctgccaaggggcggagcacatcggcgaagcccacggcc
gaggcaaagccggcgagccagcccgtggtcgctcagcctgcggccaccaagcccgttccg
gcatccggggacgcgaccgcgcctgccgcgggtacggcgcgcggccgttcggccaggcga
ggccggcaggacgcggctgcgacgcaggcacccgaggcgaagcaagctgctgcccgcgga
caagcggccaagccaccggccgtcgctcctcaggcggaacccaaggctcggccgcaagcc
gcgagccgcaagcgcggcagtgctaagcggggggctgacgaagcctga
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integrated database retrieval system
