Chromobacterium violaceum: CV_4192
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Entry
CV_4192 CDS
T00147
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cvi
Chromobacterium violaceum
Pathway
cvi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cvi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CV_4192 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvi03021
]
CV_4192 (rpoC)
03400 DNA repair and recombination proteins [BR:
cvi03400
]
CV_4192 (rpoC)
Enzymes [BR:
cvi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CV_4192 (rpoC)
Transcription machinery [BR:
cvi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CV_4192 (rpoC)
DNA repair and recombination proteins [BR:
cvi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CV_4192 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
Biotin_lipoyl_2
PaaX
Motif
Other DBs
NCBI-ProteinID:
AAQ61852
LNCC_Brazil:
CV4192
UniProt:
Q7NQE7
LinkDB
All DBs
Position
complement(4520052..4524242)
Genome browser
AA seq
1396 aa
AA seq
DB search
MKALLDLFKQVTQEEEFDAIKIGIASPDKIRSWSYGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPMQYRQLLTEEDFLDKEDQYGEEFVAMM
GAEAVKELLKKLDLDAEIEGLRRELETTNSDTKIKKIAKRLKVLEAFQRSGMKPEWMILE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELRAPDIIVRNEKRMLQ
ESVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFHKLEVMGLASTIKAAKKLVEQEVPEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLATNNVLSPANGEPIIVPSQDIVLGLYYMTRDKVNGKGEGMVFADTKEVHRAYETR
QVELATRITVRLKEWEKDEQGEFQPVIKRYNTTVGRAILSDILPKGLPFEHINKALKKKE
ISKLINVSFRRCGIRDTVIFADQLMYTGFAYSTRGGISICVDDMQIPVKKSELLGEANKE
VKEIEEQYRQGLVTQGERYNKVVDIWGRTGDKIAKAMMDELSKQKVLDREGKEVDQESFN
SIYMMADSGARGSAAQIKQLAGMRGLMAKPDGSIIETPITANFREGLTVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGFTMKAVLQGGDVIEALRDRIL
GRVTAVDVVDPSTGETVIEAGTLMDEHLVDLVDSLGIDEVKVRTAITCDTRYGLCAKCYG
RDLARGKQVNAGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRNAAASQVEGKSNGTVRF
SSQMRYVANTKGELIVITRSGEVVIHDDMGRERERRKVPYGATLMVTDGLQIKAGAVLAT
WDPHTRPIITEYAGRVKFENVEEGNTVAKQTDEVTGLSTLVVIDPKRRAGSQSKMLRPLV
KLLDDNGNEVKLAGSDASVSITFQVGAIITVRDGQDVGKGEVLARIPQESSKTRDITGGL
PRVAELFEARSPKDAGMLAEVTGTVSFGKDTKGKQRLIITDLEGNGYENLIPKDKHVLVH
DGQVVNRGESIVDGPVDPHDILRLQGIEALARYIVQEVQEVYRLQGVKINDKHIEVIIRQ
MLRRVIITDSGDTEFIQGEQVERADVLEMNDKMMAENKEPAQYENVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAYHRTRRRQNLGLDAG
ESMLFDPAPAALESGE
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctttgctcgatctctttaagcaagttacgcaagaagaagagtttgatgcgatc
aagatcggcatcgcctcgcctgacaagatccgttcctggtcttatggcgaagtcaagaag
ccggaaaccatcaactaccgtaccttcaagccggagcgcgacggcctgttctgcgcgcgc
atcttcggcccggtgaaggactacgagtgcttgtgcggcaagtacaagcgcctgaagcat
cgcggcgtgatctgcgagaagtgcggcgtcgaagtgacgctgtccaaggtgcgccgcgag
cgcatgggccacatcgagctggccagcccgaccgcccacatctggttcctgaagtcgctg
ccgtcacgcctgggcatggtgctggacatgacgctgcgcgacatcgagcgcgtgctgtat
ttcgaagcgtacgtcgtgaccgatccgggcatgaccccgatgcagtaccgccagctcctg
accgaagaggacttcctggacaaggaagaccagtacggtgaagagttcgtcgccatgatg
ggcgccgaggccgtcaaggaactgctgaagaagctggatctggacgccgagatcgaaggc
ctgcgccgcgagctggaaaccaccaactccgacaccaagatcaagaagatcgccaagcgc
ctgaaggtgctggaggcgttccagcgttccggcatgaagccggagtggatgatcctggaa
gtgctgccggtgctgccgccggaactgcgtccgctggtgccgctggacggcggtcgtttc
gcgacctccgacctgaacgacctgtaccgccgcgtgatcaaccgtaacaaccgtctgaag
cgtctgctggaactgcgcgcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaatcggttgactcgctgctggacaacggtcgtcgcggcaaggccatgaccggcgccaac
aagcgcccgctgaagtcgctggccgacatgatcaagggcaagggcggtcgcttccgtcag
aacttgctgggtaagcgcgtggactactccggtcgttccgtgattaccgtgggcccgacc
ctgcgtctgcatcagtgcggcctgccgaagaagatggcgctggagctgttcaagccgttc
atcttccacaagctggaagtgatgggcctggcgtccaccatcaaggctgccaagaagctg
gtcgagcaggaagtgccggaagtctgggacatcctcgaagaagtgatccgcgagcatccg
gtgctgctgaaccgcgccccgacgctgcaccgcctgggcatccaggcgttcgagccggtg
ctgatcgaaggcaaggcgatccagctgcatccgctggtctgcgcggcgttcaacgccgac
ttcgacggcgaccagatggccgtccacgtgccgctgtcgctggaagcgcagatggaggcc
cgcaccctgatgctggccaccaacaacgtgctgtctccggccaacggcgagccgatcatc
gtgccgtcgcaggatatcgtgctgggtctctattacatgacccgcgacaaggtgaacggc
aagggcgagggcatggtgtttgcggacaccaaggaagtgcatcgcgcttacgaaacccgc
caggtcgagctggccacccgcatcaccgtccgcctgaaggaatgggaaaaggacgagcag
ggcgagttccagccggtgatcaagcgctataacaccaccgtcggccgcgcgatcctgtcg
gacatcctgccgaagggcctgccgttcgagcacatcaacaaggcgctgaagaagaaggaa
atctccaagctgatcaacgtgtcgttccgccgttgcggcatccgcgataccgtgatcttc
gccgaccagctgatgtacaccggcttcgcctactccacccgcggcggcatctccatctgc
gtggacgacatgcagattccggtcaagaagagcgaactgctcggcgaggccaacaaggaa
gtcaaggagatcgaggagcagtaccgtcaaggcctggtgacccagggcgaacgctacaac
aaggtagtggacatctggggccgcaccggcgacaagatcgccaaggcgatgatggacgag
ctgtccaagcagaaggtgctggaccgcgaaggcaaggaagtcgatcaggaatccttcaac
tccatttacatgatggccgactcgggcgcgcggggttctgcagcccagatcaagcagctg
gccggcatgcggggtctgatggcgaagccggacggctcgattatcgaaacgccgattacc
gccaacttccgcgaaggtctgaccgtactccagtacttcatctcgacccacggcgcccgt
aagggtctggcggatacggccttgaagaccgccaactccggttacctgacccgtcgtctg
gtcgacgtgacccaggatctggtggtgatcgaagacgattgcggcaccagcaacggcttc
accatgaaggcggtgctgcagggcggcgacgtgatcgaggcgctgcgcgaccgtatcctc
ggccgcgtgaccgcggtcgacgtggtggatccgtccaccggcgaaaccgtgatcgaagcc
ggcaccctgatggatgagcatctggtggatctggtcgacagtctcggcatcgacgaagtc
aaggtccgcaccgcgatcacttgcgacacccgctacggcctgtgcgccaagtgctacggc
cgcgacctggcgcgcggcaagcaggtgaacgccggcgaagcgatcggcgtgatcgccgcc
cagtccatcggcgaaccgggcacccagctgaccatgcgtaccttccacatcggtggcgcg
gcatcgcgaaacgcggccgccagccaggtggaaggcaagtccaacggcaccgtgcgcttc
tccagccagatgcgctacgtggccaacaccaagggcgagctgatcgtcatcacccgctcc
ggcgaagtggtgatccatgacgacatgggccgcgagcgcgagcgccgcaaggtgccgtac
ggcgcgaccctgatggtgaccgacggtctgcagatcaaggctggcgccgtgctggccacc
tgggatccgcacacccgtccgatcatcaccgagtacgccggccgcgtgaagttcgagaac
gtggaagagggcaacaccgtcgccaagcagaccgacgaagtgaccggcctgtcgacgctg
gtggtcatcgatccgaagcgccgcgcgggttcgcagtccaagatgctgcgtccgctggtg
aagctgctcgacgacaacggcaacgaagtgaagctggccggttccgacgcctcggtatcg
atcaccttccaagtcggcgccatcatcaccgtgcgcgacggtcaggacgtgggcaagggc
gaagtgctggcccgcatcccgcaggaatcgtcgaagacccgcgacattaccggcggtctg
ccgcgcgtggccgagctgttcgaagcccgttcgccgaaggatgccggcatgctggccgag
gtgaccggtaccgtttcgttcggcaaggacaccaagggcaagcagcgcctgatcatcacc
gacctggaaggcaacggttacgaaaacctgattccgaaggacaagcacgtgctggtccac
gacggtcaggtggtgaaccgcggcgaatccatcgtcgacggtccggtcgatccgcacgac
atcctgcgcctgcagggcatcgaggcgctggcccgctacatcgtccaggaagtgcaggag
gtgtatcgtctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcatccgccag
atgctgcgtcgcgtgatcattaccgacagcggcgacaccgagttcatccagggcgagcag
gtggagcgcgccgacgtgctggaaatgaacgacaagatgatggcggaaaacaaggagccg
gcgcagtacgaaaacgtgctgctgggcatcaccaaggcttcgctgtcgaccgactcgttc
atctccgcggcttccttccaggaaaccacgcgcgtgctgaccgaagccgccatcatgggc
aagcgcgacgatctgcgcggtctgaaggaaaacgtgatcgtcggccgtctgatcccggcc
ggcaccggtctcgcctaccatcgcacccgccgccgccagaacctgggtctggacgctggc
gagtccatgctgttcgatccggccccggcggcgctggaaagcggcgaataa
DBGET
integrated database retrieval system
