Calliphora vicina (urban bluebottle blowfly): 135950043
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Entry
135950043 CDS
T10781
Symbol
Mtr4
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cvj Calliphora vicina (urban bluebottle blowfly)
Pathway
cvj03018
RNA degradation
Brite
Enzymes [BR:
cvj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135950043 (Mtr4)
Messenger RNA biogenesis [BR:
cvj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
135950043 (Mtr4)
Spliceosome [BR:
cvj03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
135950043 (Mtr4)
Complex C
U4/U6.U5 tri-SnRNP related factors
135950043 (Mtr4)
Ribosome biogenesis [BR:
cvj03009
]
Eukaryotic type
Pre-60S particles
Helicases
135950043 (Mtr4)
Transfer RNA biogenesis [BR:
cvj03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
135950043 (Mtr4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
nSTAND3
Caskin-tail
Motif
Other DBs
NCBI-GeneID:
135950043
NCBI-ProteinID:
XP_065355604
LinkDB
All DBs
Position
2:complement(101847751..101852715)
Genome browser
AA seq
1031 aa
AA seq
DB search
MADVDDLFNCFNEEADEIAHEPPVAAVEAPVVVTIKDKVQKETESPSKVVEKRQINEEDE
TADTSKRAKVTESILDDICVDALRSRISVHVIQSPESCTHEVATYPGQEYLPLQPFTGIP
AKEYPFVLDPFQKEAILCIDNQQSVLVSAHTSAGKTVVAEYAIAKSLNSKQRVIYTTPIK
ALSNQKYREFSEEFKDVGLVTGDVTINPSASCLIMTTEILRNMLYRGSEIMREVGWVVFD
EIHYMRDKERGVVWEETLILLPDNVRYVFLSATIPNARQFAEWVCHLHKQPCHVVYTDYR
PTPLQHYIFPAGGDGIHLIVDEKGQFKEDNFNTAMAVLQNAGEASKGDQKGRKGGIKGVN
AGQSNIFKIVKMIMERNFAPVIIFSFSKKDCEVYAMQMAKLDFNTAEEKKLVDEVFNNAL
DVLSEEDRQLPQVENVLPLLRRGIGIHHGGLLPILKEIIEILFGEGLLKALFATETFAMG
LNMPARTVLFTAPRKFDGKDFRWISSGEYIQMAGRAGRRGLDDKGIVILMIDEKVSPSVG
RGIVQGKADPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNQSSIPELYKEVQEK
QQQLDKIKVNEEHSVASYHHIREQLDSLGKQFRKWITKPEYLVPYLQPGRLVKVQNDTEE
FDWGIVVNFKKQTNNAKNPLKAETVIIVDVLLHVTEESAKNDEPKPCKPGQKGNMEVVPV
VHKLISQISSLRVYYPNDLRPADNRRSVLKTINEVKKRFPKGPPLLNPVTEMHIKDPDFH
VIVESIDKFEERLFAHPLHNSPDLERLYSRYTQKLKVLEQLKAAKAKLKEARSLLQMDEL
KHRKRVLRRMEYCTAQDVIEFKGRVACELSSADELLMTEMIFNGVFNDLTTPQSVALLST
FVCDEKSSENPKSTEELSGPLRAMQDLARRIAKISNECKLELDEETYVEKFKPFLMDVVL
AWCKGASFLSVCKMTDIFEGSIIRCMRRLEELLRQMCQAAKTIGNTELENKFAEGIRMLK
RDIVFAASLYL
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgtagatgatttatttaattgtttcaacgaggaggcagacgaaattgctcat
gaacccccagtggctgctgtagaggcacccgtagttgtgacaataaaagataaagttcaa
aaggaaactgaaagcccctccaaagttgtagaaaaaagacaaattaatgaagaagatgaa
actgcggatactagtaaacgtgctaaggtgacagaatctatattggatgatatttgtgta
gatgctttacgttcacgcatatccgtgcatgtcatacaatcaccagaatcttgcactcac
gaagtggccacctatccgggtcaggaatatttaccactgcaacctttcaccggcataccc
gccaaggagtatccctttgtgttggatccctttcaaaaggaagccattctttgcattgac
aatcaacaaagtgtcttagtttcggctcacacctcggcaggtaaaacagtagtggctgaa
tatgccattgcaaagtcgttgaatagcaagcagagagtcatttacactacaccaattaag
gcattgtccaatcagaaatatcgtgaatttagtgaagaattcaaagatgttggtttggtt
accggtgatgtcaccattaatccttcggcctcttgtttgataatgaccactgaaattctg
cgtaacatgttgtatcgtggtagtgaaattatgcgtgaagtcggttgggttgtcttcgac
gaaatccattatatgcgtgacaaggaacgtggtgtagtgtgggaagaaactttaattttg
ttgcccgataatgtgagatatgttttcctatcggctactataccaaatgcacgacaattt
gccgaatgggtatgccatttgcataagcaaccgtgtcatgttgtttatacggattacaga
ccaacgcctctgcaacattacatatttccagctggtggtgatggcatacatttgattgtg
gacgaaaagggacaatttaaggaggataatttcaatacagccatggctgtattacaaaat
gctggtgaagcgtctaaaggtgatcaaaagggtagaaagggtggaattaaaggtgtcaat
gctggtcaatcaaacatttttaaaattgtcaaaatgataatggaacgcaactttgcacca
gtcatcatcttctccttcagcaaaaaggattgtgaagtgtatgccatgcaaatggccaaa
ctagactttaacacggcagaagagaaaaaactagtagatgaagtattcaataatgccttg
gatgtgctttccgaagaagacagacaattgccacaagttgaaaatgtcttgcctttgctc
agacgtggcataggcatacatcatggtggtctcttgccaattttaaaagaaattattgaa
attctgtttggtgaaggtcttctaaaggcgttatttgccactgaaacatttgctatgggt
cttaacatgccggccagaactgttttgtttacggcaccgcgtaaatttgatggcaaagat
tttcgttggatttcttcgggagagtatattcagatggctggtcgtgccggtagacgtggt
ttggatgacaaaggtattgttattttaatgattgacgagaaagtatcaccatctgtgggc
cgcggtattgtacagggtaaagctgatcctattaactcagctttccacttgacctacaac
atggtgttgaatcttttgagagtcgaagaaattaatcccgaatacatgttggaacgttct
ttcttccaatttcaaaatcaatcctccataccagaactctacaaggaggttcaagagaaa
cagcaacaattggataaaattaaggtgaatgaagaacatagtgttgcatcctatcatcat
atacgcgaacaattggattcattgggcaaacagtttcgtaaatggatcaccaagccagaa
tatctcgttccctatttacagccgggtcgtttggtgaaggttcaaaatgataccgaggaa
ttcgattggggtattgtggtcaatttcaagaaacaaactaacaatgccaaaaatcctctt
aaagctgaaactgttataatagttgatgttctcttgcatgtcactgaagaatcggccaaa
aatgatgaaccaaaaccctgtaaacctggtcagaagggcaacatggaagttgtaccagtg
gttcacaaacttatttctcaaatttcctccttaagagtctactatcccaacgacctaaga
ccagccgataacagacgtagtgtgctgaaaaccattaacgaagttaagaaacgttttcca
aagggtcctccccttctaaatcccgtaactgagatgcacattaaagatcccgatttccac
gttattgttgaatctatagataaatttgaagaacgtttatttgcccatcctctgcataat
tctccagacttagaacgtctctattcacgctacacacaaaaactgaaagtgcttgaacaa
cttaaggcggccaaggcgaaattgaaagaagctcgttctttgctacaaatggacgaatta
aaacatcgtaaacgtgtgctgagacgtatggaatattgtaccgcccaagatgttatcgag
ttcaagggacgcgtagcctgcgaattgagttccgccgatgaacttctaatgaccgaaatg
attttcaatggcgtctttaatgacttgactacaccacaatcggtagcactactttccacc
tttgtctgtgacgaaaaatcgtcggaaaatcccaaatcgactgaagaactctcgggacct
ctaagagcaatgcaagatttggcacgccgtattgcaaaaatctcgaatgaatgtaaattg
gagctggacgaggaaacttacgttgaaaaattcaagcctttcctcatggatgttgttttg
gcctggtgtaaaggtgcctccttcttgagtgtctgtaaaatgaccgatatctttgaaggt
tccattattcgttgcatgcgtcgtttggaggaattgctgcgtcaaatgtgccaggctgcc
aagacaattggtaatactgaattggaaaataagtttgccgaaggaatacgcatgcttaag
agggacattgtttttgccgcttctttgtatttgtag
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