Calliphora vicina (urban bluebottle blowfly): 135955034
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Entry
135955034 CDS
T10781
Symbol
Msh6
Name
(RefSeq) probable DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
cvj Calliphora vicina (urban bluebottle blowfly)
Pathway
cvj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cvj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
135955034 (Msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cvj03400
]
135955034 (Msh6)
DNA repair and recombination proteins [BR:
cvj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
135955034 (Msh6)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
MCM3_WHD
Motif
Other DBs
NCBI-GeneID:
135955034
NCBI-ProteinID:
XP_065361381
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Position
3:122638921..122644363
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AA seq
1206 aa
AA seq
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MSKKLNSSFGSKSVSSPKNNLFNYFSKSPATLEKKKIPATNSTSTVSKEQQNDHEIKENL
LNKQNKVASPKEKLLQQNKIQDSDDEEVGAVTKKRRRLVLQDSDEEEMEEKQQKKDKDDS
DYEPSKDEEMPSADEGDTKESSPETSPDIKKKHKSKNVPKSSPESSPDNKKKHQTNIEPK
SKKTKLDNTLTAGSFMEKLEQLQSGNNAKTSKKLEEKCEEVTTSNLDEPVIWPHQKLEFL
KPDKIKDKKGRRPDHPDYDPSTLYVPPKFLDSLSPGVRQWWDLKSESFDCVLFFKVGKFY
EFYHMDADVGVSELGFTYMRGEFAHSGFPEISFDKMASVLVERGYKVARVEQTETPDMMT
ERCKRIKPTKFDKVVRREICQITSRGTQVFGSQCQITPNHQPNYMLAIVEQQLSNSGGCS
NYGICFIDTSIGDCYLGEFEDDKNCSRIHTLLSHNMPVLVVLEKSNIQEKTQEIMRTVLS
SVPKEFMPNAGSLQSTAEKTLKELAEQYYGGGNADNWPMVLKTMQAESDHLGLTPHANAK
LVLKALGLCINYMKKCHVAEKVLPMARYHLYQPPDTLAMFEIPTKAASNQRAHMVLDATT
LMNLRITGEEHSLQSTLDQCCTKFGKRLLHYWLCAPSCVLTTIKERQQAVTDFLNNPSML
QDARALLAPLPDFERHLAQIHHFGSKIVQENHPDGRAIFFEEKSYNKKKMQNFISILKGF
DSLINIPTMFEQAGSKLITRLTQHKNKGGIFPDLTKELNFFKQAFDHNKASETGVIAPES
GVDEDYDTAEAKIQKINQQLQDYLVDQEKYFGCRITYFGADKKRFQLEVPESHARKADSK
YSLEGQKKGAKPTRKFTTEETRNFLKKMQMAELERNNVLKDLARRIFEKFSQHYDLWKQC
VDCVAHLDVLASLAEYARTQQVICIPQVEDVAVGEQAFIEIEDGYHPCVSADTYIPNGVI
LGCNDTPPLSILTGPNMGGKSTLMRQVGLLAVMAQIGAHVPAQSCRLSLVDRIFTRLGAQ
DDILSGHSTFLVELNETSLILKHATANSLVLLDELGRGTATYDGTAIAASVVNFLADLKC
RSLFSTHYHNLIDFFHKDERITLGHMACMVENEDCDDPTQETVTFLYKYSTGACPKSYGF
NAAKLAGMPHNIIKRAYTLSKKVEAIALKRKVAAKIVAAATIGCTNEIQCANLKNLLLQL
QQCQVK
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaaaacttaactccagttttggctccaaaagtgtgtcttcacccaagaataac
ttatttaattatttttctaaatcgccggcgactttagaaaaaaagaaaattcctgcaacc
aactcaacctccaccgttagcaaggaacaacagaatgaccatgaaataaaagaaaattta
ttgaataaacaaaataaagtagcatccccaaaggaaaaattattacaacaaaataaaata
caggattcagatgatgaagaggttggggcagttaccaaaaagagaaggcgtttagtgctg
caagactccgatgaggaagaaatggaggagaaacagcagaaaaaagataaagatgatagt
gactatgagcccagtaaagatgaggaaatgccctcggcagatgaaggggatacaaaggaa
tcttcaccggaaacttctccagatatcaagaagaaacataagtctaagaatgtacctaaa
tcatcaccggaatcttctccagataacaaaaagaaacatcagactaacattgaacctaaa
tccaagaaaacaaaattggataatacccttactgccggcagttttatggagaagctagaa
caattacaatctggcaataatgccaaaacttccaaaaagctagaggaaaaatgtgaagag
gttacaacttccaatttagatgagccagtgatatggccccatcagaagctggagttttta
aaacccgataaaattaaagataaaaagggacgtagaccagatcatccagattatgatcca
tctactttgtatgtacctccaaagtttttggactctttgtcaccgggtgttcgccaatgg
tgggacctaaaatccgaaagttttgattgcgttttgttctttaaagtgggcaaattctat
gaattttatcacatggatgccgatgttggtgtaagtgaactaggctttacctacatgcga
ggcgaatttgctcactcgggtttcccagagatatcctttgacaaaatggcctcggtattg
gtagaaaggggctacaaagtggctagagttgaacaaactgaaacgcccgacatgatgacg
gaaagatgtaaacgtattaagcccaccaaatttgataaagtggtgcgtagagaaatttgc
caaattactagtcgaggaacacaagtatttggcagtcaatgccaaatcactcccaatcat
caacccaactatatgttggctatagtggaacagcagttgtcaaattctgggggctgcagt
aattatggcatttgttttatagacacttccataggtgactgttatttgggtgaatttgag
gacgataaaaattgttctcgcatacatacactgctgtctcataatatgcccgttttagtg
gtattggaaaaatctaatatacaggagaaaacacaagaaataatgcgtacggtattaagt
agtgttcctaaggaatttatgcccaatgcgggatcattacaaagtacagcggagaaaacc
ttaaaagagttggccgaacagtattatggcggaggaaatgcagataattggcccatggtt
ttgaaaaccatgcaagcagaatctgatcatttgggcttaacgccacatgccaatgctaaa
ctagttttgaaagctttaggtttatgcatcaactacatgaagaaatgccatgtagccgaa
aaagtattacccatggcccgttatcatctctaccagccacccgatacattggctatgttt
gaaattcccaccaaagctgcctctaatcaaagagctcacatggtcttagatgccaccacc
ttaatgaatttacgcattaccggcgaagaacattctttacagtcgactttggatcagtgc
tgcacaaagtttggtaaacgtttgctgcactattggttgtgtgctccttcgtgtgtttta
accaccattaaagaaagacagcaagccgtaacagactttcttaataatccttctatgcta
caagacgctagagctttattggctcctttgccggattttgaaagacatttggcccagatt
catcattttggcagtaaaatcgtgcaggaaaatcatccagatggtcgagctatatttttt
gaagagaaatcttacaataaaaagaaaatgcagaactttatatccatactcaaaggattt
gattctttaataaatattcctactatgtttgaacaagctggctcaaaattaatcacacgt
ttaacacaacataaaaacaaaggcggcatatttccagacttaactaaagaactcaatttc
tttaagcaagcatttgatcataacaaagcttccgaaactggtgttattgcaccagaaagt
ggggtcgatgaagattatgatacagctgaagcaaaaatccaaaaaatcaatcagcaatta
caggactatttggtggatcaagagaaatatttcggctgtcgtataacctactttggcgca
gataaaaaacgttttcagctggaggtaccagagtctcatgcccgcaaggcagacagtaaa
tattccttagagggccagaagaaaggagcaaaacctacgcgtaaatttaccacagaggag
accaggaatttccttaaaaaaatgcaaatggctgaattagaacgcaataacgtgttaaaa
gatttagctagacgtatatttgagaaattctcgcaacactatgacttatggaaacaatgt
gttgactgtgtggcccatttggatgtattggcctctttagcggaatatgctagaactcag
caagtgatatgcataccacaagtggaagatgttgcagtgggcgaacaggcttttatagaa
atagaagatggatatcatccctgtgtttcagccgacacctacataccaaatggtgtgatt
ttgggctgtaacgacacaccacctctctccatacttaccggtcccaatatgggtggtaaa
agtacgctaatgcgtcaggtaggcctattggcggtaatggctcaaataggtgctcatgta
ccggctcagtcctgccgtctatccttggtagatcgcatatttacccgcctgggagctcaa
gatgatattttatcgggacattctacatttttggtagaattaaatgaaacttcattgatt
ttgaaacatgccacagccaatagtttggtattgctagatgaattgggacgcggtactgct
acttatgatggcactgccatagctgcttctgttgtcaactttttggccgatcttaaatgc
agatctttattctctactcattatcataatctcatagatttctttcacaaagacgaacgc
attactttgggtcatatggcctgcatggtggaaaatgaggattgtgacgatcctacccaa
gaaactgttacgttcttgtataagtattcaactggcgcttgtccaaaatcctatggcttc
aatgcagccaaattggctggcatgccgcataatatcattaaaagagcttatacgctctcc
aaaaaagttgaagcaattgctttaaaacgtaaagtagcagctaaaattgttgccgccgct
acaatcggttgtaccaatgaaattcagtgtgcgaatttgaaaaacttattactacaacta
cagcaatgccaagttaaataa
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