Calliphora vicina (urban bluebottle blowfly): 135955298
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Entry
135955298 CDS
T10781
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
cvj Calliphora vicina (urban bluebottle blowfly)
Pathway
cvj03440
Homologous recombination
cvj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cvj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
135955298 (rad50)
03450 Non-homologous end-joining
135955298 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cvj03032
]
135955298 (rad50)
03400 DNA repair and recombination proteins [BR:
cvj03400
]
135955298 (rad50)
DNA replication proteins [BR:
cvj03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
135955298 (rad50)
DNA repair and recombination proteins [BR:
cvj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
135955298 (rad50)
BRCA1-C complex
135955298 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
135955298 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
SMC_N
SbcC_Walker_B
AAA_15
AAA_21
AAA_29
AAA_16
AAA_22
ABC_tran
YdjO
Motif
Other DBs
NCBI-GeneID:
135955298
NCBI-ProteinID:
XP_065361714
LinkDB
All DBs
Position
3:38129517..38136337
Genome browser
AA seq
1310 aa
AA seq
DB search
MSTIERLSIQGIRSFGGNAGDAQVIRFSSPVTLILGENGCGKTTVIECLKYALTGECPPG
SDRGKNFIHDPKIFSLTDVLGQIKLEVRNVQGARLSICRSMKLGLKRNKITFETLDATLN
YLNDDDKKSSESISKRCADVDLVMSQFMGVSKAIINNVLFCHQEDSSWPLDEPKKLKEKF
DAIFGITEYNKALDRIIKMRKDEMEQLKIKESDLRFVEHLKQEMEGKSLGLQKYQQKAKT
IDDNCKLCEEEMAPIEERLKQIHKIEYDVGKYQAQKVELQTKQKNCTEQMNGLKKKIKKM
FEGTMEELDTEISSFNQRISEKRVERKEVEDKLKGQKVEEKGMQSKHNEIDKKRVVIQQQ
KQKEQDCKQKRADKLKGLCQELNIPIEFDLMNSVNEITELLDEIQAVLTSEQCKISETVT
QHDKEDQERQTKIDQLRVELTKLQESVSTMQKQKKAYEKESEQIEKNILQTEKATQQLKV
VTEKLKETEQCYEESLAKFNQNEVRETLKNDKETIKKLEAQFRKVDERLTFLNSISKLVA
ELSIKEKELEKREDEMRKVKSKHSDNFRKVFEEGRNIETNFHRHLKASYEKSRIKIKEYN
EKLNSLKLKHQRIEIKRKNLKDDLQKCEKELEDCKEKIFEKCHSTPYEEMLAKSKASVSK
YQLEHGAQKSAEVFYKNYLQKIDEEPYCPLCQKCMDTDEASNLTTELTDKIQDLPQNIER
VEKLLKEEQKKYESLLHLKPVIDKVARLEAEIPQKKEVLKTLQNQLAESSSLMENTQTLL
ADPTTVLDTANSMMGDMSLLDESIKESNRLKNDIEKLKRKMPQGTDSDNVSIDEVQAEKT
TISAELEEKRKELEKNQQYYEKNMDALNKLRELKNSLKDQQIKLQEGIQNLPQLKERKSE
LSNLLVTMLAEMQEKQTRVAPLKQQLSAANSEKSQLKEKNRVKINQMQKKLDNFRRMDHD
INRLDNEVLDYQQLNLDHKLKEKEEALTASKEELKKIAQTISETTEKLDAIKVEIANQES
MDRDFKDNRELKILEEKQKDLNVKYEALCEELGKLDFSTVSKEKSELTKKRDKITVRKGE
LLGQRGEVKHQIQKLERELAEPKYRDSLVNYRRIFYEVQLTKKVVNDLGQHRVALEWALM
QFHTEKMQEINRLIREYWRLIYRGNDIDYIQIQTEEGKDSASPMDRRRSYNYRVIQSKNN
SEIEMRGRCSAGQRVLASLIIRMALAETFSSNCGVLALDEPTTNLDRMNILSLCDALNRI
VEDRQAQSNFMLIIITHDEAFISTLGKINSYHRVFRNDECKSVIRRVEVA
NT seq
3933 nt
NT seq
+upstream
nt +downstream
nt
atgtctaccatagaaaggctttctatacagggcattcgcagttttggtggtaacgctggt
gatgcacaggttatacgttttagttcgccggttactttgattttgggtgagaatggttgt
ggcaagacgactgtcattgaatgtcttaaatatgcattgacgggcgaatgtccgcccggc
agtgaccgcggtaaaaatttcattcatgatcccaagattttcagtctcaccgatgtcttg
ggacaaatcaagctggaggtgcgcaatgtccaaggagcgcgactttcgatctgtcgttcc
atgaagttgggcctgaagcgtaataaaatcacctttgaaacgttggatgccactttgaac
tatttgaatgatgacgataagaagagcagtgaatcaataagcaaacgttgtgccgatgtt
gatctggtcatgagtcaatttatgggtgtatccaaggccattattaataatgtgttgttt
tgccatcaggaggattccagctggcctctggatgagcccaaaaagcttaaggaaaagttt
gatgccattttcggcatcaccgaatataacaaggctttggatcgtattattaaaatgcgc
aaagatgaaatggaacaattgaaaattaaagaatctgatttacggtttgtggagcatttg
aaacaagaaatggagggaaaatctttgggtcttcaaaaatatcaacaaaaagccaaaacc
attgatgacaattgtaaattgtgtgaagaagaaatggctccaattgaggagcgtttgaag
caaattcataaaattgaatatgatgtgggaaaatatcaggcccaaaaggtggaattgcaa
accaaacaaaaaaattgtactgaacaaatgaacggacttaagaagaaaattaagaaaatg
ttcgaaggtaccatggaagaactagacactgaaatatcatcgttcaaccagagaatctct
gaaaaacgtgtggaacgcaaagaagttgaagacaaactcaagggacagaaagtggaggag
aagggaatgcaaagcaagcacaatgaaatcgacaagaaacgtgttgtcattcagcaacaa
aagcaaaaagaacaagattgcaagcaaaaaagagccgataaattgaaaggtctctgtcag
gaattaaatatacccattgaatttgatttaatgaattcggtcaatgaaatcactgagttg
ttagatgagatacaagcagttttaacgtccgaacaatgtaagataagcgaaactgtaaca
caacacgacaaggaggatcaagagcgtcaaactaaaattgatcaacttagagttgagcta
accaagttgcaagagtctgtctccaccatgcaaaagcagaaaaaagcctacgaaaaggag
tccgagcagatagaaaagaatattttacaaacagaaaaagccacccaacaacttaaagtg
gttaccgaaaagctcaaagaaactgaacaatgttatgaagagtcgctggcaaaattcaat
caaaatgaagttcgtgaaactttaaagaatgacaaagaaaccattaagaaattggaagcc
caatttcgtaaagtagatgaacgtttaacattccttaattccatatcgaaactggtggcc
gaattgagcattaaagagaaagaacttgagaaacgtgaagatgaaatgcgcaaggtcaaa
agtaaacacagtgacaacttccgcaaagttttcgaagaaggccgcaacatagaaacaaat
ttccatcgtcacttaaaagcgtcctatgaaaagtctcgcattaaaattaaggaatacaat
gaaaaattaaattctctaaaattgaagcatcaacggattgagattaagcgcaaaaacctt
aaagatgacttgcaaaaatgcgaaaaggagttggaagattgcaaagagaaaatctttgaa
aagtgtcattctacgccctacgaagagatgctggccaaatcgaaggcctcagtcagtaaa
tatcaattggaacatggcgcccaaaagtcagctgaagtattttataaaaattatttgcaa
aagattgatgaggaaccctactgccccttgtgccagaagtgtatggacacagatgaggcc
tctaatctaacaacggaattaactgataaaatacaagatttaccgcaaaatattgaaaga
gtagagaagttactcaaggaagaacaaaagaaatatgaaagtttattgcacttaaagcca
gtcatcgataaagtggctcgcctggaagcggaaataccccaaaagaaggaggtcctgaaa
actttacaaaatcaattggccgaatccagcagtctgatggaaaatacacaaaccctgctg
gccgaccccactaccgttttggataccgccaattctatgatgggagatatgtcactcttg
gatgagtccattaaagaatcgaatcgccttaaaaacgatatcgaaaagttgaaaagaaaa
atgccccagggcactgacagcgacaatgtctccatcgatgaagtacaagcggaaaaaacc
acaatttctgcagaattggaggagaaacgcaaagagttggaaaagaatcagcaatattat
gaaaagaatatggatgctcttaataaattaagagaattgaaaaattctttgaaagatcag
caaataaaactacaagaaggcatacaaaatctaccccaacttaaggaacgcaaaagcgaa
cttagtaacctgttagttaccatgctggccgaaatgcaagagaagcaaacaagagttgcc
cccttaaagcagcaactaagtgcagccaattcggaaaaatcccagctgaaggagaagaat
cgcgttaaaattaatcaaatgcaaaagaaactggataattttagaagaatggatcatgac
attaataggctggacaacgaagttttggattaccaacaattaaacttggatcataaatta
aaagagaaagaggaggccctaactgccagcaaagaggaacttaagaaaatagctcaaacc
atttccgagaccactgaaaagttggatgccattaaagtggaaattgcaaatcaagaatct
atggatcgtgactttaaagacaatcgcgagctgaaaatattggaggaaaaacaaaaagat
ttaaatgttaaatatgaggccctctgcgaagagctgggcaaattagatttctccactgtc
tccaaagagaaatcagagttaacgaaaaagcgtgacaagatcaccgtacgtaaaggtgaa
ctattgggtcagcgaggtgaggtcaagcatcaaatacaaaaacttgaacgtgagttggcc
gaaccgaaataccgcgattcgctggtaaattatcgtcgcatcttctatgaagtacagttg
accaagaaagtggtcaatgatttgggtcagcatcgtgtagctttggaatgggccctcatg
caattccacaccgagaaaatgcaagaaatcaatcgtttgatacgtgaatattggcgcctt
atttatcgtggcaatgacattgattacatacaaattcaaacggaagagggcaaagattct
gcctcacccatggatcgtcgtcgcagttataactatcgtgttatacaatcgaaaaacaat
tcggaaattgagatgcgtggtcgctgcagtgccggtcaaagagttctggcctcgctcatc
atacgtatggctctggccgagaccttcagcagtaactgtggtgttttggccttggatgaa
cccaccaccaatttggatcgcatgaatattctgtcattgtgtgacgccctcaatcgcatt
gtcgaagatcgccaggctcaatccaacttcatgttgatcataatcactcacgatgaagcc
ttcatttccaccttgggcaaaatcaatagctatcaccgcgttttccgtaatgatgagtgc
aaatcggtaatacgtcgtgttgaagtagcctag
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integrated database retrieval system
