Calliphora vicina (urban bluebottle blowfly): 135956305
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Entry
135956305 CDS
T10781
Name
(RefSeq) uncharacterized protein LOC135956305
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
cvj Calliphora vicina (urban bluebottle blowfly)
Brite
KEGG Orthology (KO) [BR:
cvj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cvj03041
]
135956305
Enzymes [BR:
cvj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135956305
Spliceosome [BR:
cvj03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
135956305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HA2_C
R3H
Ank_5
AAA_22
Ank_2
OB_NTP_bind
Ank
ResIII
ATPase
Ank_4
nSTAND3
AAA_19
Ank_3
HA2_N
Flavi_DEAD
PhoH
T2SSE
AAA_11
AAA_30
Zot
Motif
Other DBs
NCBI-GeneID:
135956305
NCBI-ProteinID:
XP_065362820
LinkDB
All DBs
Position
4:39589798..39595940
Genome browser
AA seq
1157 aa
AA seq
DB search
MSTNTRKHRQKAAGIDGGSSSNHRHNHMEKVKIPESERLPLQLKISDFLASSDDEIILKG
LSNTHRKYLHQYAARLGLKSQSYGNKNSRELHIRRRKRLATLGDVRPLNMSAATRAMLQS
LLPTIQTQLVTNQVIVQSNSSASHRYRNLRGDSISVALGPRMIPPRSQRISNELFRDKQE
LPIFHYQGELHQMLKQHNVFIVNGETGSGKTTQVPQFILNEATRRNRPCRIIVTQPRRVA
AVSVAHRVAKERGEPLGETVGYQIRMESRVKKTSNLIYTTSGCFLRSIMADVRDLFRKVS
HVIIDEIHERDKNTDFTLITIKEQLKHNKDLKVILMSATMDIQLLSNYFDNCPVLNVPGQ
GYDVKIYHLEDILFHTGYRTALMEKYLRSMNEAFPTPTSMFSDNILETMNRTTADRLEDE
YMQQVLDSLIEQCCESEEVRAKEELNEMFDQIQYYIESEGMSINAGHSDTGLTPLMAACK
CNMPEFVQFLILRQANVDIRDNDGYEAIDYARLHADGLCLQIIMGSTNCVERVKQQEELS
QQDKEKHRILVAYQQQFNDDNEVDHDLILSLLEGLYRNGHSGAIMVFLPGYNDIVQQRDL
IQSTLPASTYKLCILHGHMDSKDQFEALQRHPVRKIILSTNIGQTSITIPDLAYIIDSGK
VKMNTYDSITESSQLQSIWISQADACQRSGRAGRTQNGVCYRLYSKAKYQFMPQFSIPEF
MRIPLTEICLYSKTLEPKCGVQNYLQKSLNPPSTLSILNAVRKLKILGVFRDDESVTELG
KHLVDIPLDVQLGKCLLYGVFLKCFDPILTICAYHSVKDPFILPTDRSAQGQASFQRKSF
SGQSFSDQMGILSLHKSYMEVRHNPRKVREFCNKYFLSHSAMEMFCATRRQINDVIKNMF
NINYMDKVFNNDWHMIQLCLVAGFYPNVALIDRKSLKLVCGAEKQLILQRTSSLNPPGKK
HLKEFINQMPHDWIVFYEKSRITNTCTINMNTVVPSLMIALQCGLDCDITNSVGNDEDDS
DDEDLLCNDDLDSDSDSQHSLQLTSNSATNNTHSSSNSSNVLNDFEALQLKLSKTLKNIS
LNNDNCKTIMSLDNWIKFDIQSGDAKLLLLMRIALHTQFLAFLKTGPNAATSSAAFCIQK
LLNTLHSSHAATFKMTV
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacaaatacgagaaaacatcgccagaaagcagccggcattgatggaggctccagc
agcaatcatcgccacaaccacatggaaaaagtgaaaatacccgaaagtgaacgtttaccg
ttacaattgaaaatttctgattttctggccagcagcgatgatgaaattatactaaaaggt
ctctccaatacacatcgcaaatacttgcatcaatatgccgctcgactaggtctcaagtcc
caaagttatggcaataagaatagtcgtgaattacatatacgcagacgtaaacgtctggcg
accttgggcgatgtacggcccttgaatatgtcggctgccactagagcaatgctacaaagt
cttctgccaaccatacaaacacaactggttacgaatcaggttattgttcaatcaaattct
agtgcatcacatcgatatagaaatttacgcggtgattcgatatcggtagctttgggtccg
cgtatgataccaccacggtctcaacgtatcagcaatgaattgtttcgcgataaacaagaa
ttgccgatatttcattatcaaggagagttgcatcaaatgctgaagcaacataatgttttt
atagtaaatggtgaaactggttccggcaagaccacacaagttcctcagttcatattaaat
gaagctacacgacgtaatcgaccatgtcgcatcattgtgacacaacccagaagagtggca
gctgtctcggtagcccatcgtgtagcaaaagaaagaggagaacctttaggcgaaacagtt
ggctatcaaatacgcatggaaagtcgcgttaaaaagacttccaatttaatctacacaaca
tctggctgctttttacgttccataatggcagacgtacgtgatcttttccgcaaggtgtcg
cacgtcattatcgacgaaatccatgaacgtgacaaaaataccgatttcaccctgatcacc
ataaaggaacaattgaagcataacaaagatctcaaggtgatacttatgtcggccaccatg
gatatacaattgttatccaactattttgataattgtccagtattaaatgtacccggtcaa
gggtatgatgttaaaatttatcacttagaagatatactttttcatacgggatatcgcacc
gctttaatggagaaatatttacggtcgatgaatgaagcgtttcccacacccacctccatg
tttagcgacaatattttggagactatgaatcgtacgactgctgatcgtttagaggatgag
tacatgcaacaggtgttggattcgttaattgagcagtgttgcgagagtgaggaagtgcgt
gctaaggaagagctaaatgaaatgtttgatcagatccagtactatatagaaagtgagggt
atgtctataaatgcaggacattcggatacaggtttgacgccattaatggcggcctgtaaa
tgtaatatgcccgaatttgtacagtttttaatactaagacaggcaaatgtggatatacgt
gacaatgatggttacgaggccatagattatgcccgtcttcatgcagatggtttgtgtttg
caaattatcatgggctctaccaactgtgtagagcgtgttaagcaacaggaggagttaagt
cagcaggataaggaaaagcatcgcattttggttgcctatcagcagcaattcaacgatgac
aatgaggtggatcatgatttgatattatctttgctggagggtctctataggaatggccac
agtggcgccattatggtgtttttgcccggttacaatgatatcgtgcagcaaagagactta
atacaaagcactttaccggcctcaacctacaaactgtgtattttacatggccacatggat
tccaaagatcaatttgaggcattacaaaggcatcccgtgcgcaagattatattgtctacg
aatataggacaaacctctataacaataccagacctggcctacatcatagattcgggtaaa
gtcaaaatgaatacttatgactcgataactgagtcatcacaactacaatcgatttggata
tcacaggccgatgcctgccagcgttcaggcagagctggtcgcacccagaacggtgtttgc
tatcgtttatattccaaagcaaaataccaatttatgccacaatttagcatacccgaattt
atgcgcattcccttgaccgaaatatgtctgtattctaaaaccttggagcctaaatgtggg
gtacaaaactatttgcaaaaatcccttaatcctccgtcaacgctcagcatactaaatgct
gttagaaaattgaaaattctaggagtttttcgtgacgatgaatcagtaacggaattgggt
aaacatttggtggacatacccctggatgttcagttgggcaagtgcttgttgtatggtgta
tttttaaaatgctttgatcccatactaaccatatgtgcttatcattcggtcaaggatccc
tttatattgccaacagatcgttcggcccaaggccaggcctcttttcagcgtaaatcattt
tcaggccaatcgtttagcgatcaaatgggtattttatcgttgcacaaatcgtacatggaa
gtccgacacaatccccgcaaagtaagagagttctgtaataaatatttcctctcccattcg
gccatggaaatgttttgcgccacacgcagacaaattaacgacgtcatcaagaatatgttc
aacatcaactacatggataaagtgtttaacaatgactggcacatgatacagttgtgtctg
gtggctggtttttatcccaatgtggctttaatcgatcgtaagtccctgaaattggtttgt
ggcgctgaaaagcaattgattttacagagaacctcgtcgttaaatcctccgggcaaaaaa
catcttaaagaatttatcaaccaaatgccgcacgattggatagtgttttatgaaaagtcg
cgcataacaaacacctgtactattaacatgaacactgtggtgccctctcttatgattgcc
ctacaatgcggcttggattgcgatataaccaacagtgtgggcaatgatgaggatgacagc
gatgatgaggacctcctttgtaacgatgaccttgactccgactcagactcgcaacattca
ctgcaattaacttccaactctgccaccaataatacacactcctcctctaactcttcaaat
gtgttaaatgattttgaagctttacagctgaaattgtcgaaaactttgaaaaacatatct
ctcaataatgacaactgtaaaaccataatgtctctagataattggattaaattcgatata
cagtccggtgatgctaaactattgctgctcatgcgcatagctttgcatacacagtttctg
gcgtttttgaaaactggccccaatgcagcgacttcgtcagcggcattttgcatacaaaag
ttattgaatacattgcactcttctcatgcagctacatttaaaatgacagtttaa
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