Calliphora vicina (urban bluebottle blowfly): 135956505
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Entry
135956505 CDS
T10781
Symbol
Upf2
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
cvj Calliphora vicina (urban bluebottle blowfly)
Pathway
cvj03013
Nucleocytoplasmic transport
cvj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cvj00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
135956505 (Upf2)
03015 mRNA surveillance pathway
135956505 (Upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvj03019
]
135956505 (Upf2)
Messenger RNA biogenesis [BR:
cvj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
135956505 (Upf2)
mRNA cycle factors
P-body specific factors
135956505 (Upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
135956505
NCBI-ProteinID:
XP_065363100
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All DBs
Position
4:34423268..34427523
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AA seq
1175 aa
AA seq
DB search
MSTEIDINATATDQGDNEPSIDPEELERQEREELNAFIVELKAKIVAKSHLRYENTNFDL
PEDTYFAKLDSSLKRNTAFVKKLKQFTAAQLDILMKDMKGLNLSKYISEICSALSEAKIK
MTDVPAVVLLCSKLHQTYADFDNEFFEAWQKTLVLKSGEKISNPSKLRVDLRLFAELVSS
GVITSKQGLGLLGNVLTYVISQDKEDHSNFSIILSFCRHCGEEYAGLVPRKMIDLAEKYD
NPEIPKSDFLPSDKQENLRKLLKDYFKNLCKHLLSEQAELKNMTNNLKKAMASKGEISTK
TKEKCELMQANFDKLLSSAQTLSDLLDEPLPEMAKETEICNPGAVIENMMDDAALGELDP
WGDEETKSFYIDLPDLRQFLPNFSAPKVDPEQIEDTSEMTEEALDADIDNDIDLDDPPST
TSDPPNEKDQGDIDEAVGATEKLPDKIGNALMEVGRQSNQTPGSNKQQFAQFLKNLNNCV
NKELIDSAAIEFLLNYNTKNNRKKLTKSIFAVHRNRLDLLPFLSRFVAIVNLCNTDVALD
LSELLRKEFKWHIRMKNQLNIESKIKILRFMGEMVKFGLLKKFDALSCLKVLLRDFQHHQ
IEMACAFIEVAGIYLYNCKDTRWLMNTFLDQMMRLKTATALDSRHAAQVENVFYLVKPPE
TVKQDVVLRPVIHEYIRHLIFEELNKQNVDRCIKMLRRINWHEPTISNYVIKCLSKAYLL
RFPLIRCLADLLSGLSSYQEKAVTMVIDNVFEDIRAGLEIHSPKLAQRRIAMAKYLGELY
NYKLVESTNILNTLYSIISLGVSTEDDAISELDPPDSLFRLKLACVLLDTCGPYFTSSGS
KQKLDYFLVFFQHYYWYKKSNPIFSKVQDTHDLFPILVDHMYRDCLSNVRPKLKLYKNLE
QAKEAIKKLQEKLYPQLKELTEQQNTEDSANLHPIPEDSEFDDAASDDSSSELDRRPRDE
RRDDEDDENTEDGTNQANTTDWTENEGMPEDDCKPAVRTKEDLEFEQMFEKMAQDSYQER
LKETVKPNTKDIPVPMMVRNNKKSYEQISSASAAAATSVATPAPSNETKPANAATIPFVL
MVRSGKGGKQQFKQFVAPSDSQLAINLKLQEEKIREEKERVKRLTLNITDRIEEEDYQES
LMQSQRGNQPNLYARPNKPKFKHQKGAPDADLIFH
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgagtactgaaatagacatcaatgccactgccaccgaccagggcgacaatgaaccgtct
atagatccggaagaattggaacgtcaggaacgtgaagaactaaatgcgttcatagtcgaa
ttaaaagctaagattgtggcaaaatctcatttacgctatgaaaatactaattttgattta
cctgaagatacctactttgccaaattggattcaagtctgaaacgcaatacagcttttgtt
aagaagttgaaacaatttactgccgctcaattagatatcctaatgaaagatatgaaagga
ttaaatttgagtaaatatatttcggaaatatgctcagctctatcggaagctaaaattaaa
atgacagatgttccggcagtggtattactttgttcaaagttgcatcaaacctatgcggat
ttcgataatgaattctttgaggcctggcagaagactttggtgcttaaatctggtgaaaaa
atctcaaacccaagcaagcttcgagtagatttgcgtctatttgccgaacttgtcagctcg
ggggttataaccagtaaacagggtttaggcctgttgggcaatgtactgacctatgtaatt
tcccaggacaaagaagatcacagcaatttctctattattttatcattttgtcgtcattgt
ggtgaagagtatgctggtttagtgccaagaaaaatgatcgatttagctgaaaaatatgat
aatccagaaattccaaaatccgactttttaccctctgacaagcaagagaatttaagaaaa
ttgttgaaggattattttaaaaacttgtgcaaacacttgctgtctgaacaagcagagcta
aagaacatgacaaataatctcaaaaaagctatggcttccaaaggtgaaatttctacaaaa
acaaaagaaaaatgcgaactaatgcaagcaaactttgataaactattatcatccgcacaa
acactatcggatttattggacgaacctttgccggaaatggctaaggaaactgaaatttgt
aatcctggagcagtaattgaaaatatgatggatgatgcagctctaggagagcttgatcca
tggggtgatgaagaaacaaagagtttttacatcgatttaccagatctccggcaatttctg
ccaaatttttcggcacccaaagtggatcccgaacaaattgaggatacctcagaaatgact
gaagaggcattggatgcagacatagacaatgatatcgacttagatgatccaccatcaaca
acatcagatccacccaatgaaaaagatcaaggggatattgatgaagctgtgggagcaaca
gaaaagttaccagataagattggaaatgctttgatggaagtagggcgacaaagtaatcaa
acacctggttcaaataagcaacagtttgcacaatttttaaagaacttaaataattgtgtc
aataaggaactaatagattcggccgctattgaatttcttctgaattataatacaaaaaat
aatcgaaaaaagctaacaaagtctatatttgcagtgcatagaaatcgcttagatctttta
ccgtttttatcgcgctttgtggctattgtaaatctctgcaatactgatgtggctttggat
ctttcggaattattgcgcaaggaattcaaatggcacatacgcatgaagaaccagttgaat
attgagtctaaaataaaaattttgcgtttcatgggtgaaatggtaaaatttggtttattg
aagaagtttgatgccttaagctgtttaaaagtcctcctaagagattttcaacatcatcaa
attgaaatggcttgtgccttcatagaagttgccggcatctatttatacaactgcaaagat
acacgttggctcatgaacactttcctcgatcaaatgatgcgtttgaaaactgctacggct
cttgattctaggcatgcggctcaagtcgagaatgtgttttatttggtaaaacctccagag
actgtaaaacaagatgtggtattaaggcctgttatacatgagtatataaggcatttaata
tttgaagagttaaataagcagaatgttgatcgttgcataaaaatgctaagacgcattaat
tggcacgaacccaccataagtaactatgttattaaatgtttgtcaaaggcttatctattg
cgattccctctaatacggtgcttggctgatcttctatcgggtttgagctcatatcaagag
aaagcggttactatggttatagacaatgtgtttgaggatattagagctggtctggagatc
cattcaccaaaattggcacaacgacgcatagctatggcaaagtatttgggagaactttat
aattataagctagtggaatccaccaatatattaaatactctttactccataatttccttg
ggtgtttccaccgaagatgatgcgatttcagagttagaccctcccgatagtttgttcaga
ctaaagttagcttgtgtcttattggatacatgtggtccatattttaccagttctggcagc
aaacaaaagttggattactttttagtgttctttcaacactattattggtataaaaaatcg
aatccaatattttcaaaagtgcaagatacccacgacttgtttccaatattagtggaccac
atgtatcgtgattgtttgtccaatgttaggcctaaactcaaactttataaaaatcttgag
caggccaaggaagccattaaaaagttgcaagaaaaactatatccacaactaaaggagttg
acagaacagcagaatacagaggattctgcaaatttgcatccaataccagaagatagtgaa
tttgatgatgcagccagtgatgattcttcctccgaattagatagaagaccacgcgatgaa
cgacgcgatgatgaggacgatgaaaatacggaagatggtacaaaccaagcaaataccacc
gactggactgaaaatgagggtatgcccgaggatgattgtaagccggccgtgagaactaag
gaggacttggaatttgaacaaatgtttgaaaaaatggcccaagatagttaccaggaacgt
ttaaaggaaacagttaaaccgaacactaaagatatacccgtaccaatgatggttagaaat
aacaaaaagtcatacgagcaaatatcctcagcctctgctgccgctgcaacatctgtagcc
actccagctcccagcaatgaaactaaacctgccaatgctgccaccataccatttgtttta
atggtacgtagcggcaagggtggtaaacaacaatttaaacagtttgtagctccctccgat
tctcaattggccataaatttgaaactacaagaggaaaagatacgcgaagaaaaagaaagg
gtcaaacgtttaacactgaacataaccgatcgcattgaagaggaagattatcaggagtct
ttaatgcaatcgcaacgtggtaaccagccaaatctgtatgctcgcccaaacaaaccaaaa
tttaaacatcaaaaaggtgctcccgatgctgatttaatatttcattga
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