Calliphora vicina (urban bluebottle blowfly): 135958823
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Entry
135958823 CDS
T10781
Symbol
Upf1
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cvj Calliphora vicina (urban bluebottle blowfly)
Pathway
cvj03013
Nucleocytoplasmic transport
cvj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cvj00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
135958823 (Upf1)
03015 mRNA surveillance pathway
135958823 (Upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvj03019
]
135958823 (Upf1)
Enzymes [BR:
cvj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
135958823 (Upf1)
5.6.2.5 RNA 5'-3' helicase
135958823 (Upf1)
Messenger RNA biogenesis [BR:
cvj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
135958823 (Upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
135958823 (Upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
Helicase_RecD
AAA_22
AAA_16
NPHP3_N
ATPase
SRP54
nSTAND3
Motif
Other DBs
NCBI-GeneID:
135958823
NCBI-ProteinID:
XP_065365805
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All DBs
Position
4:complement(13325555..13333630)
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AA seq
1221 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEENDLIGADTQASDFDYRDLTLASQTQSSQLDGGLGASGGIG
NQNLRKLDLQTKLGTANGSADLQFEEEDEDNALCPVDELPCHACKYCGIHDPGTVVMCNN
CKKWFCNGRGSTSGSHIVNHLVRAKHREVTLHSEGPLGETVLECYSCGVRNVFVLGFIPA
KADSVVVLLCRQPCAAQNSLKDMNWDQDQWKPLISDRSFLAWLVKVPTEQEQLRARQISA
GQINKLEELWKENIEATFQDLEKPGVDTEPSQVLLRYEDGYQYEKIFAPLVMLEAEYDKK
LKESQTQEGIEVRWDIGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGELHKPWDAVGH
VIKVPDNFGEDVGLELKSSAKAPVHCTSNFAVDFIWKCTSFDRMRRALKLFAFDRNSVSN
YIYARLLGHGRPDGLDELVFRGPPPKLYSAPNLPELNRSQVYAVKHALQRPLSLIQGPPG
TGKTVTSATIVYQLVKQHGGTVLVCAPSNTAVDQLTEKIHRTNLKVVRVCAKSREAIDSP
VSFLALHNQIRNMETNIELKKLQQLKDETGELSSADEKRYRTLKRAAENQLLEAADVICC
TCVGAGDARLQRIKFTSILIDESMQSTEPECMVPVILGAKQLILVGDHCQLGPVVMCKKA
ARAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRKLKID
FPWPQPDRPMFFLVTQGQEEIAGSGTSYLNRTEAANVEKITTRFLKAGVKPEQIGVITPY
EGQRAYLVQYMQYQGSLHSKLYQEIEIASVDAFQGREKDIIIMSCVRSNEKQGIGFLSDP
RRLNVALTRSKYGTIIVGNPKILSKQPLWNHLLNFYKDRKVLVEGSLNNLRESLIQFQKP
KKLVNTLNMGAHFMSTMMADAREAIVPGSFYDRSGQFGYSGTTTANNFGYNFGNNLIGGN
NSAFGFTNNAHLQNMGGQNTANNGMNNYMNSPHSGAGLVGGFNATGSQRPNMNQFNTNLN
NGPSNNQHNWHNFQHDSISYISAERAQAAMNNMPVPVGMFMNMSNIPPRFYNQHQQAIQA
AAKQGRRTAGFSGNQSNTINTKNTPLNKAPGKGRTTNSAATANTNALTSATTEVLSASNL
SGSGNSSQTTAPIFTQKNMSQQMSQTVFTGLSQQPELSQDFGQISQMDGILSQDVGFGTD
ALNNDRLNLGLNSQSQFSQPY
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtggatgcttatggaccgagttctcagaccttaacgtttttggatactgaggag
aatgatttaattggagcggatacccaagcgtctgactttgactatcgtgacttaaccttg
gcctctcaaactcaatcttcacaacttgatggtggcctaggtgcaagtggtggcattgga
aatcaaaacttacgcaaattagatttgcaaacgaaattaggcaccgctaacggttcggct
gacttacaattcgaagaggaagatgaagacaacgccttgtgtcccgttgatgagctaccc
tgtcatgcctgcaaatactgcggcattcatgaccccggcacggtagtgatgtgtaacaat
tgtaaaaaatggttttgcaacggccgtggcagcacttcgggctctcacattgtcaatcat
ttggtgcgtgccaaacatcgtgaggtaactctgcactccgaaggaccactgggagaaacc
gtgctcgaatgttattcgtgtggtgtacgtaacgtattcgttttgggctttataccagcc
aaggctgattcagtggtcgtactgctgtgtcgccaaccttgtgcagctcaaaattctcta
aaggacatgaattgggatcaagatcagtggaagccattgatatcagatcgctccttcctg
gcatggctagtgaaagtacccaccgaacaagaacaactaagagcaagacaaatttcggcc
ggccaaattaataaactagaagaattgtggaaggaaaatatcgaggccacctttcaagat
ttggaaaaacccggcgtagacacggaaccctcccaggttttgttgcgctatgaggatggc
tatcagtatgagaaaatatttgctcccttggtaatgttggaggccgaatacgacaagaaa
cttaaggaatcccaaacacaagaaggtattgaagtacgatgggacattggtttgaataag
aaaaccatagcttacttcactttggcaaaaaccgattctgatatgaaactgatgcatggc
gatgaattgcgtttgcgttatgtgggtgagctacacaaaccctgggatgctgtcggccac
gttattaaggttcccgataatttcggtgaggatgtgggcttagaattgaaatcttctgcc
aaggcccctgtgcattgtacttccaattttgctgtagattttatatggaaatgtacttcg
ttcgaccgcatgcgcagagctttaaaattgtttgcctttgatcgcaattcagtgtctaat
tacatatacgctcgtcttttgggtcacggccgtccggatggtttggacgagcttgtgttt
cgtggacctcctcccaaactgtatagtgctcccaatttacccgaactgaatcgttcgcaa
gtctatgccgttaagcatgctctacaaagacctctgagtcttatccagggtccgcctgga
accggaaaaaccgttacttctgctactattgtatatcaactcgtcaaacaacatggcggc
actgtattggtatgtgcccccagtaacactgctgtagatcagttgactgagaagatacat
cgcacaaatttgaaagtggtacgtgtgtgtgccaagtctcgcgaagccatcgacagtcct
gtcagctttttggctctacacaatcagatccgcaatatggagacaaacattgaattgaag
aagttgcaacagttgaaggatgaaactggtgaattgtcgtcggctgatgaaaagcgctac
agaacattgaagagggctgccgaaaatcaacttttagaggcagctgatgttatttgctgc
acttgtgtaggtgcaggcgatgctcgtttgcagcgcattaaattcacttccatattgatt
gacgagtcgatgcagtctaccgaaccggagtgcatggtgcctgtaatactgggtgctaaa
caactgattttagtgggcgatcattgtcaattgggtcctgtggtaatgtgcaaaaaggct
gcacgagccggtctttcccaaagtctttttgaacgtttggtggtcctgggtattcgtcca
ttccgtttggaagtacaatatcgtatgcatccggaattgtctcagttcccttcgaacttc
ttttatgagggttcgctgcaaaacggtgtttgtgcagaagatcgaaaattgaaaattgat
tttccttggccgcaaccggatcgtccaatgtttttcctggtaacacaaggtcaggaggaa
atagccggttccggtacctcctatctcaatcgtactgaggccgccaatgtagaaaagatt
acaacgcgcttcttgaaagcaggcgtaaaacccgaacaaatcggcgttattaccccctat
gagggacagcgagcatatctggtgcagtatatgcaatatcagggaagtttgcattcaaag
ctttaccaagaaatagaaatagccagtgttgatgccttccaaggtcgtgaaaaagatata
attataatgtcttgtgttagatcgaatgaaaagcaaggcattggttttctcagtgatccc
agacgtcttaatgtggcattaacccgctccaaatacggtacaattatagtgggcaatccc
aaaattctctccaagcagccactttggaatcacttgcttaacttctacaaggatcgcaaa
gttttggtggagggctctttgaataacttgcgtgaatcgctcattcaattccagaagccg
aaaaagttggtcaacactcttaatatgggtgcacacttcatgagcaccatgatggccgat
gctcgggaagccattgtacctggttcattctacgatcgttcgggacaatttggttattcg
ggtaccaccacagcgaataattttggctacaactttggaaacaatttgattggcggtaac
aattccgcatttggtttcaccaataacgcccatctacaaaatatgggtggtcaaaatacg
gccaacaatggcatgaacaattacatgaattctccacattcaggtgctggtctcgtaggt
ggttttaatgctaccggctctcagcgtccaaatatgaatcaatttaatacaaatctcaac
aatggtccctctaacaatcaacacaattggcacaacttccagcatgattctatttcctac
atatcggctgaaagagctcaagcggccatgaacaatatgcccgtgccggtcggcatgttc
atgaatatgagcaatataccgcctcgtttctataatcaacatcaacaggccatacaagct
gctgccaaacaaggccgtcgtactgctggtttctcgggcaatcagtccaacaccatcaat
accaaaaatacgccacttaacaaggcacctggtaaaggccgcactacaaattctgctgct
acagccaacactaacgcactaacatcagcaactactgaggtcttgtcagcctccaatttg
agcggctcgggcaactcttcacagactacggctccgatatttacgcagaagaatatgtcg
caacaaatgagtcaaaccgtgtttaccggtttatcacaacagccagaattgtcacaagat
tttggccaaatatcacaaatggatggtatattatcacaagacgttggttttggaacggat
gcactcaataatgatcgtttaaatttaggacttaattctcagagccaattttcacagcct
tattga
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integrated database retrieval system
