Calliphora vicina (urban bluebottle blowfly): 135959577
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Entry
135959577 CDS
T10781
Symbol
pAbp
Name
(RefSeq) polyadenylate-binding protein
KO
K13126
polyadenylate-binding protein
Organism
cvj Calliphora vicina (urban bluebottle blowfly)
Pathway
cvj03015
mRNA surveillance pathway
cvj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135959577 (pAbp)
09123 Folding, sorting and degradation
03018 RNA degradation
135959577 (pAbp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvj03019
]
135959577 (pAbp)
03041 Spliceosome [BR:
cvj03041
]
135959577 (pAbp)
Messenger RNA biogenesis [BR:
cvj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
135959577 (pAbp)
mRNA cycle factors
Stress granule specific factors
135959577 (pAbp)
Spliceosome [BR:
cvj03041
]
Complex C
Other components
Complex C specific factors
135959577 (pAbp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RBD_DEAH11
RRM_10
RRM_occluded
RBD_RDR6
RRM_RdRP1_2
Motif
Other DBs
NCBI-GeneID:
135959577
NCBI-ProteinID:
XP_065366603
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All DBs
Position
5:2496357..2508184
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AA seq
643 aa
AA seq
DB search
MNTGGPNYQMASLYVGDLHQDINEAGLFEKFSDAGPVLSIRVCRDIITRRSLGYAYVNFQ
QPADAERALDTMNFDLIGDKPIRIMWSQRDPSLRRSGVGNVFIKNLDKSIDNKAIYDTFS
AFGNILSCKVATDDKCQSKGYGFVHFETEEAANKAIAKVNGMLLNGKKVYVGKFIPRKER
EKELGEKAKLFTNVYVKNFPDDVNDEKLKEMFEPYGKITSYKVMTKDDGKSKCFGFVAFE
TTEAAEAAVEALNAKDMGEGKTLYVARAQKKAERQQELKRKFEELKKKRQDSVYGVNLYV
KNLDDTIDDERLRKEFSLYGTITSAKVMTDEEGRSKGFGFVCFVAPNEATCAVTELNGRV
MGSKPLYVALAQRKEVRKAHLASQYMRHMGGMRMQQLGQIFQHNAAGGFFVPTMGPGQRF
LGPQVPTQMRNTPRWAAHVPRPAQAGAAPAAGGFQNAAMAPAGTAQYRPQAAGGARGQPQ
AVQGAHAAAANTMRNSGARAITGQQSIPAPNIALAGPHLPANAAQQRAANYKYNTNVRNP
TVQQVPAPQPVPQMHQKGPEKLLASLLANATAQEQKQILGERLYPMIERMHPSLAGKITG
MLLEIENSELLHMIEDPEALKAKVEEAVAVLQVHNVRETVPTN
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgaacacgggtggtcctaactatcaaatggcttccctttacgttggtgatttgcatcag
gatattaatgaagctggactttttgagaaattctctgatgctggtccagtattatccatt
cgagtatgtcgcgacatcataactcgtcgttctttaggctatgcctacgttaacttccag
caaccagctgatgctgagcgtgctttggataccatgaattttgatttaatcggtgataaa
cccattcgcattatgtggtctcagcgtgatccctcattgcgtcgttccggtgttggtaat
gttttcatcaaaaacttggacaagagcattgataacaaagccatttatgatactttctcg
gcatttggtaatattttgagctgcaaagtagctacagacgataagtgtcaatccaagggt
tacggttttgtacatttcgaaactgaagaggccgccaataaggccattgccaaagtgaac
ggtatgttgttgaacggtaagaaagtttacgttggcaaattcattccccgcaaggaacgc
gagaaggagctcggcgaaaaggctaaattgttcactaacgtctacgttaagaacttcccc
gatgacgttaacgatgagaaattgaaggaaatgtttgagccttacggtaaaatcaccagc
tacaaggtcatgaccaaagacgatggtaagagcaagtgtttcggctttgttgcctttgag
actactgaggctgctgaagccgccgtcgaagccctcaatgctaaggacatgggtgagggt
aagaccttgtatgttgctcgtgcccaaaagaaggccgaacgccaacaggaacttaaacgt
aagttcgaagaattgaaaaagaaacgccaagattccgtatacggtgtcaatttgtacgtc
aagaatttggatgacaccatcgatgacgaacgtttgcgcaaggaattctctttgtatggt
acaattacatccgccaaggtaatgactgatgaagaaggccgctctaaaggctttggcttc
gtctgctttgtggctcccaatgaagctacttgtgctgtcaccgaattgaatggtcgcgtt
atgggctcgaaacctttgtatgttgccttggcccaacgcaaagaagtgcgcaaggctcac
cttgcctctcagtacatgcgtcacatgggtggtatgcgtatgcaacaacttggtcaaata
ttccaacataatgctgctggtggtttcttcgtgcccaccatgggacccggtcaacgtttc
ttgggtccacaagtgcctacacaaatgcgtaacacaccacgctgggctgctcatgtgcct
cgcccagctcaggctggtgccgctcccgctgccggaggcttccaaaatgccgccatggct
cccgctggtactgctcagtaccgcccacaagctgctggtggtgctcgtggtcaaccacaa
gctgttcaaggagctcatgctgccgctgccaacaccatgcgcaatagcggtgctcgtgct
atcactggacaacaatctattccagctcccaatattgctttggctggtcctcatttgcca
gcaaatgctgctcaacagcgtgctgccaactacaagtacaacaccaatgtacgcaaccca
acagtgcaacaagtcccagcacctcaacccgtcccacagatgcatcaaaagggacccgaa
aaacttttggcttctttgttggcaaatgctacagcacaagagcaaaaacagattttgggc
gaacgtttgtatccaatgatcgaacgtatgcatccatctttggccggtaagatcactggc
atgttgctggaaatcgaaaattccgaactcttgcacatgattgaagatcctgaggccctt
aaagccaaggttgaagaagccgtcgctgtgttgcaagttcacaacgttcgtgaaactgtg
cctaccaattaa
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