Calliphora vicina (urban bluebottle blowfly): 135960275
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Entry
135960275 CDS
T10781
Symbol
fand
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cvj Calliphora vicina (urban bluebottle blowfly)
Pathway
cvj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cvj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135960275 (fand)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvj03019
]
135960275 (fand)
03041 Spliceosome [BR:
cvj03041
]
135960275 (fand)
Messenger RNA biogenesis [BR:
cvj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
135960275 (fand)
Spliceosome [BR:
cvj03041
]
Complex B
Other components
Prp19-related factors
135960275 (fand)
Complex C
135960275 (fand)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_12
Mad3_BUB1_I
TPR_15
TPR_10
ARM_TT21
PPR
RPN7
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
135960275
NCBI-ProteinID:
XP_065367592
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All DBs
Position
5:4874750..4877789
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AA seq
880 aa
AA seq
DB search
MAKTDSGSLAMDIDFPEEDVPYEEEILRNAYSVKHWLRYIDHKAKAPNNAVNIVYERALK
ELPGSYKIWYNYLRTRRKQVRGKCITDAMYEEVNNTFERALVFMHKMPRIWMDYGSFMTL
QCKITRTRHVFDRALRALPITQHHRIWPLYLKFVQKYDIPETAVRIFRRYLKLAPDDAEE
YIEYLLSVGRLDDAAQQLANIVDNEHFVSRHGKSNHQLWNELCDLISKNPDKVHSLNVDA
IIRGGLRRYTDQLGHLWNCLADYYVRSGLFDRARDIYEEAIQTVRTVRDFTQVFDEYAQF
EELSLNKRMEIVANDPTATEEDDIDVELRLARFEHLMERRLLLLNSVLLRQNPHNVHEWH
KRVKLYEDKPHEIINTYTEAVQTVQPKLAVGKLHTLWIEFAKFYESNGQVEDARVVFERG
TEIEYVKVEDLASVWCEWAEMEIRQENFEGALKLMQKATVMPKRKVAYHDDSETVQMRLY
KSLKVWSMYADLEESFGTFKTCKAVYDRIIDLKICTPQIIINYGLFLEEHNYFEEAFRAY
EKGIALFKWPNVYDIWNAYLTKFLKRYGGSKLERARDLFEQCLENCPPEHAKYFYLLYAK
LEEDHGLARHAMAVYDRATSAVKPEEMYDMYNIFVKKAAEIYGLPRTREIYEKAIECLPE
ENMRHMCVRFAEMETKLGEIDRARAIYAHCSQVCDPRITADFWQTWKEFEVRHGNEDTMR
EMLRIKRSVQATYNTQVNMMAAQYIANHTAADSSAGDAMRMLDAKAAEANNQQKDKPALK
PQTSSNIMFVRGETQGGLAKDKVVNPDEIDIGDSDEEDMDDDDDDEENNDTETNDAQHSK
ATRKDDNDVVMKKLRIEQKSIPSKVFGGLKPAANEEEDDD
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atggctaaaaccgatagtggctctttggccatggatatagatttccccgaggaagatgta
ccctatgaagaggaaattttgcgtaatgcttactctgtaaagcattggttacgttacatt
gatcacaaggctaaggcccccaacaatgctgttaatattgtgtatgaaagagctttgaaa
gagttgcccggcagttataagatttggtacaactatttgcgcacccgtaggaagcaagta
cgtggcaaatgtattacggatgccatgtacgaggaagtgaacaatacgtttgaaagagct
ttagtgtttatgcataaaatgcctcgtatttggatggactatggctcctttatgactttg
caatgtaagattactcgtaccaggcacgttttcgatcgcgccttgagagctcttcccatt
acccaacatcatcgcatttggcctttgtatttaaagtttgtgcaaaagtatgatataccg
gaaacggcggtaagaatctttaggcgttacttaaaattggcaccagatgatgccgaggag
tatatcgagtatctgttgagtgtgggacgtttagatgatgctgcccagcagctggctaat
atagtagacaatgagcatttcgtttccagacatggtaaatccaatcatcagctttggaat
gagttgtgcgacttaatatcgaaaaatcccgataaagtacattccctaaatgtggatgcc
attatacgaggtggtctgaggagatacaccgatcaattgggtcatttgtggaattgtttg
gctgattactatgtgcgttctggtctctttgatagagcacgcgatatttatgaggaagcc
attcaaacagtcagaactgtgcgtgattttacccaggtgtttgatgaatatgctcaattt
gaagaattgtctttaaataaacgtatggaaattgtggccaacgaccccacagctactgag
gaagatgatattgatgtggaattgagattggctcgctttgaacatcttatggaaagacgt
ttgttgttgcttaacagtgtgttgttgcgtcaaaatcctcacaatgtacatgagtggcat
aaacgtgtgaaattgtatgaagacaagcctcatgaaataatcaatacctacacggaggct
gtgcaaacagtgcaacctaaactggcagtgggtaaattacacactttatggatagagttt
gctaaattctatgaatctaatggtcaagttgaagatgctcgtgtggtatttgaaagaggc
acggagatagagtatgtcaaggtggaagatttggctagtgtttggtgtgaatgggctgag
atggaaatacgccaggagaatttcgaaggagctcttaaactcatgcaaaaggccactgtt
atgcccaagcgaaaagtggcttatcatgatgactcggaaactgtacaaatgcgtttgtac
aagtctttaaaagtgtggtccatgtatgctgatttggaggaatcatttggcacattcaaa
acttgcaaagcggtctatgatcgtataattgatttgaaaatctgtaccccacaaatcatt
attaactatggtctatttttggaagagcacaattactttgaggaggcctttagggcctat
gaaaagggcatagcgctctttaagtggcccaatgtctatgacatttggaatgcctacctc
actaaattccttaaacgttatggtggctctaagctggaaagagccagagatttgtttgag
caatgcttggaaaattgtcctccggaacatgcgaaatacttctatttgctctatgccaaa
ttggaggaggaccatggtttggccagacatgcaatggcggtatatgatagagccacaagt
gccgtcaagccagaggaaatgtatgacatgtataatatatttgttaaaaaggcggcggaa
atttatggtttgccgcgcaccagagaaatctatgaaaaggccattgaatgtttgcccgag
gaaaatatgcgtcatatgtgtgtgagatttgcagaaatggaaactaaattgggagaaata
gacagagctagggctatatatgcacattgttcacaggtatgtgatcctcgtattacagca
gatttttggcaaacttggaaagaattcgaggttagacatggcaatgaagataccatgcgt
gaaatgttgcgtatcaaacgttcggtacaggccacttacaatacacaagttaatatgatg
gcagcacaatacatagccaaccatactgctgctgattcctcagctggcgacgctatgcgt
atgttggatgccaaagcagccgaggcaaataatcaacaaaaagataaacctgcactcaag
ccacaaacttcctcaaacattatgtttgtacgtggcgaaacacaaggcggtttagctaaa
gataaagtggttaatcccgatgaaattgatattggcgacagtgatgaagaagacatggat
gacgatgatgatgatgaggagaataatgacactgaaactaatgatgcgcaacattcaaag
gctacacgtaaagatgacaatgatgtggtaatgaagaaactgagaatagaacaaaagtca
ataccatctaaagtgtttggcggtttaaaacctgctgctaatgaagaggaggatgatgat
tga
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