Calliphora vicina (urban bluebottle blowfly): 135960406
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Entry
135960406 CDS
T10781
Symbol
Pcf11
Name
(RefSeq) uncharacterized protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cvj Calliphora vicina (urban bluebottle blowfly)
Pathway
cvj03015
mRNA surveillance pathway
Brite
Transcription machinery [BR:
cvj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
135960406 (Pcf11)
Messenger RNA biogenesis [BR:
cvj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
135960406 (Pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
135960406
NCBI-ProteinID:
XP_065367763
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Position
5:complement(23382482..23404552)
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AA seq
1979 aa
AA seq
DB search
MDNATSTQRENEQRVAEEYLSSLSDLNCNSKPLINMLTMLAEENIEYAAVIVKVVEEHIA
KVPSEFKLPILYLIDSIVKNVKSTYVQLFSQSIVNIFCGAFEKVNEKIRERMYALRQTWN
EVFSAQRLYALDVKVKRLDHNWPITAKQPSIHVNPNFLKVNSAQAIPTEMEKILQDKTRE
LLELRKRKLELELEATKKHLEEQEKQFSKTAEGVIPPVETLVAANTLQTVGIRGPPMASQ
MMPNIMPPGYMGGPTSIAVNPAMRPAMFHPHMRGFRPNLHPNMMNAPPQGMSTANMMNAG
IAAANLNKPKVHPVNSALLNSVRQRDPRLQRQQQQQQQHQKMQQNQNGERSMGQQQNVGS
THLDKDKQERNHKSNYKSPTRISSSSRSAGGSRSNKSSQRDKERERERDRKRSESKSSTT
SSSSAGSLTANSERKKGFSKTTNKQSSKCDKDAFEIAPLSTAFKRKSTSPTSSPTKSRDS
KRSNSHKSRNSSRSKTRSRSRSPDDKTTTSRASYGDVDLRRTSISSNSSSIINSPEKRPK
VLDSDHEITSNKKENLTQPPVAAAANTSDNDLDKKKSTENILSSASGSSSVATTATTASA
ANTVGSNPSSTMETLKDSETEKKEEGGQVSKDLEEDGKKRPLAPVKDEEPVAKKSKSAKI
DALFGSEDVDLRQLIPPPVLAGPTSSQDDIAPPPPAIHMSTDISRESNENWDNLKTDSNK
NPTTKPKSSLEDVRAKLAKTAKLSKLSKFDKLTRDIDHRNKLAELQMNDDTQEANDEKIR
TMISQAQELLETNSISQDQYKHLVKTVMSINETNKLKEAKRRESLNAIKQKHNNDEGSND
SSERNMAMQAILKKRIPKLNKGQTAYEQNSNADSQHSEGSAGNAEDSPRTEDKQDSNDDQ
TPPLQTSTRTNRGQREKRGPKVSKWGERVVEPPSVNVPMGPGGPQRPWNPLMAPNKRGIP
PFRGNVPHNIRPSWPMGSGNGNINGPPQGPPHFGKGHMGPIRGNNLPPIGPPQAPVIPKP
CNSIDNPQEDVVRTITIDGAAKEIRFYDQVAIVFMEVDQPREIGFQNGQRGICIDNNEPV
VLHFNAGYKSMQIDGETFNLRFGFPSRELYIDEHWYEIYFGGPPISVPIRNKIHMLKAEG
PPPQVNIGPLRRDLVVGKINMIVDAHNVIPLFLDARLQTFKLGDSEHSIQFADNLLTVIL
DGTPTRVEYGGLPKSLFLGSKKYFVRFGALPQGVVAGKVQIKDMLYVETKPPAKEETAME
TVETLPSPAEINKVELQKTPAPTSVPILPAAALSNINIDELFQKLVSTGILGGSSGILPA
VNNAAAVTAPKAETKTIESDKSVTVISSESNSTEEVAPPPPSVHMDPIKPIDLSKPESIK
TRQAAIVETLFSGMQCSSCGVRFPPEQTIKYSQHLDWHFRQNRRERDTSRKAHARKWYYD
LNDWVQYEEVEDMEEREKNLFDSQQNDPETMDETSNQRSTNSPVPTCSAGVDDVDRACDM
CQEKFEQYYDNELEEWHLRSAIRIEDKIYHPLCYEDYKASLNPPPKSSDEEEETPNTHDN
EISTIQIDDDNAVDIVIKVEEDNKTDKENVGTSHTLEDDDDDVIVLPNEEPSVTEIVDDD
DDDEYVPANVTREQMGNVEDEDEGQGHGELNETTESDVEIQEPHIPFTDLDTYVEKELPE
GDDASQLSFMNVKIKEEPKEDEDEDDGFEEVGTVVQAPEEISINISEETQTHTIDSSNPA
LSPIPERPASTASSAHQNEDIESLMEPPSMDLNISMDGNIDTADEHNLSAAGPVPTVPLA
SLVNKIKINITKNTVTTSSNTSTSSNNATASSTMSSNSINQTDSLGHAASSVSNPIPTIS
TIPVLCGGGTTISSISSSLLGGGAAGEYDDLSAVEEFGENSVSTISVIGSYGSSVPTITH
INRPVVSAAPTIPPPKPVTPPPVEETITYELKPALKKASLRKKEKVVCGNETSGLCSIM
NT seq
5940 nt
NT seq
+upstream
nt +downstream
nt
atggataatgctacgagtacccagcgggagaatgaacagcgtgtagcggaagaatatttg
tccagcttatcggatttgaattgcaacagcaaacccttaatcaatatgctgaccatgttg
gcggaggaaaatattgagtatgcggctgtcatcgttaaagtcgttgaagaacatattgcc
aaggttccttctgaatttaaattgccaatattgtatttaattgattctattgtaaaaaat
gttaaaagcacttatgtgcaactcttcagccaaagtattgtcaatatattttgtggagcc
ttcgaaaaggttaatgaaaagatcagagaacgcatgtatgcgttgaggcaaacctggaac
gaggtattctccgcccaaagattatatgctttagatgttaaagtgaaacgtctggatcac
aattggcccataacagccaaacaaccttcgatacatgttaatccgaatttcctaaaagtt
aattctgcccaggctatacccacagaaatggagaaaatattacaggataaaacgcgagag
ctgctggaattgagaaaacggaagctagagttggaacttgaggccaccaaaaaacattta
gaggaacaagaaaaacaattctccaaaacagccgaaggtgttataccacccgtagaaact
ttagtggctgccaatactttacaaacagtgggaatacgtggtcctcctatggcatctcaa
atgatgcccaacattatgccacccggctatatggggggacccacaagtatagcagttaat
ccggccatgagacctgccatgtttcatcctcatatgagaggtttcagaccaaatctacac
cccaacatgatgaatgccccgccacagggtatgtccacagccaatatgatgaatgcaggc
atagcggcagcaaatttaaataaacccaaagtgcatcctgtaaactcggctttgttaaat
tctgtacgacaaagagatccacgcttgcagcgtcagcaacagcagcagcagcaacatcag
aaaatgcaacagaatcagaatggcgaaagatctatgggtcagcagcagaatgttggctcc
acacacctagacaaagataaacaagaacgcaatcacaaaagcaactacaaatctcccaca
cgcatctcgtctagcagccgttcagccggcggcagtcgctctaataaaagttctcaacgc
gacaaagaacgcgaacgtgaacgagatcgtaaacgcagcgagtcgaaaagttctaccaca
tcctcctcgtctgcgggttccttaacagcaaatagcgaacgcaaaaagggattttccaag
acaacgaacaagcaatcctcaaagtgcgataaagatgcctttgagattgcccccttgtcg
actgcatttaaacgtaaatccacttcccccacatcgtcacccacaaagtcgcgtgactcg
aaacgttccaatagccataaatcacggaactcttcgcgcagcaaaacaagatcacgcagt
cgttctccagatgacaaaaccacaacgtccagagcatcttatggtgatgttgatcttaga
cgtacgtccatctcgtctaactcgtcgtctataattaactcacctgaaaagcggccaaaa
gtattagattctgatcatgaaattactagcaacaaaaaagagaatttaacacagccacct
gttgcagctgccgcaaacacaagcgacaatgatctagacaaaaaaaaatctacagaaaat
atactatcatcagcatcaggatcatcatcagttgcaacgacagcgacaactgctagcgca
gctaacacggtcggcagcaatccctcctcaactatggaaactttaaaggattcggaaacg
gaaaagaaagaagaaggcggccaagtaagtaaagatcttgaagaggatggcaaaaaaagg
cctttggctccggtcaaagatgaagaacccgtggctaaaaagagtaaatcggcaaagatc
gatgcgttatttggttcggaagatgtagatttgcgacaactaataccaccacccgtatta
gctggtcctacatcgtcacaagatgatattgcacctccaccgccagccattcatatgtcc
accgatatatctagagaaagcaatgaaaactgggataatcttaagactgacagcaataaa
aaccctacaactaagccgaaatcaagtcttgaagatgtccgtgcaaaacttgccaagacc
gctaaattaagtaaactttctaaatttgataaacttacacgcgatattgatcaccgcaac
aagttggccgaattgcaaatgaatgacgatacccaggaggcaaatgatgaaaaaatacgc
accatgattagccaagctcaagagctgttagagaccaactctattagtcaagatcaatac
aaacatttggtgaaaacggtcatgtccataaatgaaaccaacaaactgaaagaagccaaa
cggcgagagtctcttaatgcgattaaacaaaagcataataatgatgaaggctccaatgat
tccagtgaacgtaatatggcaatgcaggccattctaaagaaacgtataccaaaattaaac
aagggtcaaacggcctatgagcaaaactcaaatgctgattctcaacatagtgaaggtagt
gccggtaatgccgaagattcaccacgcactgaggataagcaagattccaacgatgatcaa
acaccacccttgcaaacctctacacgaacgaatagaggacaacgtgagaagcgtggacca
aaggtgtctaagtggggagaacgtgttgtggaacccccgagtgttaatgtgcctatggga
ccgggagggccgcaacgtccttggaatcctttgatggcacctaataaacgtggtatacca
ccatttcgtggtaatgtacctcataatatacgtccatcctggccaatgggcagtggcaat
ggcaatatcaatggcccaccccaagggccacctcatttcggtaaaggccacatgggccct
atacgtggtaataacctaccacccataggtccccctcaagctcctgtcatacctaaaccc
tgcaactctatcgacaatccccaagaagatgtagtgcgcaccataacaatcgatggtgct
gccaaagaaatccgtttttacgatcaagtggctatagttttcatggaggtggatcaaccc
agagagattggtttccaaaatggccaacgtggcatttgcattgataacaacgagccggtg
gtattacacttcaacgctggctacaaatccatgcaaatcgatggcgaaacatttaattta
cgttttggtttcccctcgcgtgaattgtacattgacgagcactggtatgaaatctatttc
ggaggcccacccattagcgtgcccatacgcaacaaaatacatatgctaaaggccgaagga
ccaccgccacaagtaaatattggtcctttaaggcgagatttggtagtgggaaaaattaac
atgattgtcgatgctcacaatgttataccattgttcttggatgctcgcttgcagaccttc
aaattaggtgacagtgaacacagcatacaatttgccgacaatcttttaactgttattttg
gacggaacacccactcgcgtcgaatatggtggtttacccaagagtctgtttttgggcagt
aaaaaatatttcgtacgttttggggctttgcctcagggtgtagtagcgggtaaagtacaa
atcaaggatatgctgtatgttgaaacgaaaccaccagctaaagaggaaacagcaatggaa
acggtggagactttgccttcaccagctgaaataaataaagttgaactgcaaaagactcca
gcaccaacctccgtaccaatactgccggcggcggctcttagtaatataaatattgatgaa
cttttccagaaattggtatccactggtatattgggcggttcaagtggtatattaccagct
gttaataatgctgccgctgttactgctccaaaagcagaaactaaaacgattgaaagcgat
aaatcagtaacagttatttcttcagaatcgaattcaacagaagaagttgcaccaccacca
ccctcggtgcacatggatcccattaagcccattgacctttcgaagccggaatcaataaaa
acacgccaagctgctattgtcgaaactctattctcgggcatgcaatgcagcagttgtggt
gttcgttttccaccagaacaaaccattaaatacagccaacatttggactggcatttccga
cagaatcgacgtgaaagagacacttcgcgcaaggctcatgctcgcaaatggtattacgat
ctcaacgattgggtgcaatacgaagaggttgaagatatggaggaacgtgaaaagaactta
ttcgattcacaacaaaacgatcccgaaactatggatgaaacgtctaatcaacgttccacc
aattcacccgtacccacgtgctcggccggagtggatgatgtggatcgtgcctgtgatatg
tgtcaagagaaatttgagcaatactatgacaatgaactggaagaatggcatttgcgttct
gccataagaattgaagataaaatctatcatccactttgttatgaagactacaaggcctca
cttaatcctccacctaagtcaagtgacgaagaggaagaaactcctaacacacatgacaat
gaaatatcgacaatacaaatcgatgatgataatgcagtcgatattgtgataaaagtggag
gaagataataaaaccgataaggaaaatgttggaactagccacacgcttgaagatgatgac
gacgatgttattgttttgcccaatgaagagccttcggttaccgaaatcgttgacgatgat
gacgacgacgaatatgtgccggcgaatgtcacacgagaacaaatgggcaatgtggaagac
gaagatgagggtcagggtcacggcgaactcaacgaaactacagaatctgatgttgaaata
caggaacctcacattccctttacggacttggacacctatgttgagaaggaattgcctgaa
ggagatgatgcctcacaattgtcctttatgaatgtgaaaattaaagaggagccaaaagaa
gacgaagatgaggatgatggttttgaagaagtcggaactgtagttcaagctcccgaggaa
atatccattaacatcagtgaagagacccaaactcatacgattgattcgtccaatcccgct
ttatcgcccataccagaaagaccagcctcaacagcatcctctgcgcatcagaatgaagac
atcgaatcgctaatggaaccgcccagtatggatttgaatatctcaatggatggtaatata
gatacggcagacgagcacaatctgtccgctgccggtcccgttcctactgtgcccttggct
agtttagttaataagattaaaataaatataaccaagaacactgtaaccacaagtagcaat
actagtactagtagtaataacgcaacagcatcctcaacgatgtcgtctaactcaatcaat
caaacagatagtttaggtcatgctgcaagctcagtttccaatcccatacccaccatatct
accataccagtgttgtgtggtggtggtaccacaatcagttccatatccagtagtctatta
ggcggtggtgctgctggcgaatacgacgatctatcggcagtcgaagaattcggagaaaac
agtgtaagtacgatttcagtaataggcagttacggcagcagtgtacccacgatcacccat
ataaatcgaccggttgtatcagccgctcccaccatacctccaccaaaaccagtcacaccg
cctcccgttgaagaaactataacttatgaactaaaacctgcgcttaaaaaggctagttta
aggaaaaaagaaaaagtggtttgcggcaatgagacatcgggactttgttccattatgtaa
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integrated database retrieval system
