Calliphora vicina (urban bluebottle blowfly): 135960500
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Entry
135960500 CDS
T10781
Symbol
Rrp42
Name
(RefSeq) exosome complex component RRP42
KO
K12589
exosome complex component RRP42
Organism
cvj Calliphora vicina (urban bluebottle blowfly)
Pathway
cvj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135960500 (Rrp42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvj03019
]
135960500 (Rrp42)
Messenger RNA biogenesis [BR:
cvj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
135960500 (Rrp42)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
135960500 (Rrp42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
135960500
NCBI-ProteinID:
XP_065367875
LinkDB
All DBs
Position
5:104113221..104114561
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AA seq
296 aa
AA seq
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MANIALSEAEKTFILHGVEEDFRCDGRSRRDYRPMELECEVVNNASGSARLRLANTDILV
GVKCEIDKPSPLFPNQGKIEFFVDCSANATPEFEGRGGEDLALELSDTLANAYESPLAFD
LKPLCILPGQQCWKLYVDILILECGGNLFDAVSLAAKAAIFNCKIPRVTASLMDAGEAEL
IISDDPYDCTRIDIENIPILVTVCKIGDCCLVDPSAEEEECSTASVVVAVSKRNNKNYVS
HTHTVGGGSLHKDTMYNCLKLGMTAAEYLNEALVKAVRLEESRVGPKRKETVGFLK
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atggctaatatagccttgagtgaagcagaaaaaacatttatcctacacggcgttgaggaa
gactttcgttgtgatggtcgatcacgtcgagactaccgacccatggaactagaatgtgaa
gtggtaaataatgccagtggttcggctagattacggctggcaaatactgatatattagtg
ggagtaaaatgtgaaatagataaaccctcaccactttttccaaatcaaggaaaaattgaa
ttctttgttgattgttccgccaatgctactcccgaatttgaaggtagaggtggtgaagac
ttggccttagaattgtcagatacattggcaaatgcatacgagtccccactggcttttgac
ttgaagcccttgtgtatattgccgggtcaacaatgttggaagttatatgttgatattttg
attttagaatgtggaggcaatttattcgatgctgtttccttagctgccaaagcagccata
tttaattgtaaaattccccgagtaacagcttccttaatggatgctggagaagctgagctt
ataattagtgatgatccctatgactgcacccgcatagatatagaaaatatacccatattg
gtgacagtttgtaaaattggagattgttgtttggtggatccctcagcagaggaagaagaa
tgtagtactgctagtgtggttgtggcagtttcgaaacgtaacaataaaaattacgtttct
catactcatactgtgggtggcggttccctacacaaagacaccatgtacaattgcttaaaa
ttgggcatgacagcagccgaatatctgaatgaagccttggttaaagctgtaagattggag
gaaagtcgtgtaggtcccaagagaaaggaaaccgttggttttttgaaatga
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