Calliphora vicina (urban bluebottle blowfly): 135961943
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Entry
135961943 CDS
T10781
Symbol
shn
Name
(RefSeq) uncharacterized protein shn isoform X1
KO
K09239
human immunodeficiency virus type I enhancer-binding protein
Organism
cvj Calliphora vicina (urban bluebottle blowfly)
Brite
Transcription factors [BR:
cvj03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
135961943 (shn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
135961943
NCBI-ProteinID:
XP_065369667
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All DBs
Position
5:complement(99808973..99971137)
Genome browser
AA seq
2952 aa
AA seq
DB search
MARRKGGSRGKSTVNARKTALENAREKLRDDPGGTRDQQQQKEQGQAVNITNMEATTTAN
TTTTTKYYNKTKLQNNNNHQQNKTTSTITNTNKKTQQTTYREANETQTPQMVETAPTTQK
KLTAKQAKAAAKLAAQQQNAKSNTNNQQQQQQPQQQQQNEASKKMIQEKEAKSNVTNIPA
TTTTNTTTKSNTTAINANNTSTTQQRITAAAASANNISNSSSSSNNNNNRNNNNNNSSNM
NTSDNSMNSNIKDQQQQQLENSTKSDNQTQQLSDNNTAASSSMSWNNSKYLHKKFKRLAS
TTENDALQEAEKLRKTSMSSASSSVSSPPPPPQTKTTTQPQQQQHQQSLTIPAGGVIKND
EHLTNGVLNKHETQQLLNEALPHSNNKSEIINKSYSQNQVLLQLAQQQPPQQQQQQQQHV
AVASSNSTEISNSNKTQTVSSVSSSGGGIVATSTTSSSTAGGGGRYKCPYCDLSCTKPSV
LQKHIRAHTNERPYPCEICGIAFKTKSNLYKHCRSRSHAARQKGIEVSPDADDGLSDQDA
DPELSNSSSEMFSRTGSPIEELSNQILTQLPTQPEQQPFAQYNEPQVSIAPCNDSPAPFS
AVKPTFLQQQPQKMPLGSPAAGTLPPAAAAVGPNNTAATSGHKQSIDYKPYKPKFHNASL
YATAKEAAAAAAVTSSTMSTTGLAAAALVTPVPQKDVVTLQKIPESPHLSINQHQHLVAA
GEQKIVVPTSVHLPPPPQQSPTHMQHHPSLSPSTQMKLNNHISTHQLQQMQQQQLQHMQS
QSPHHLLGPPPPANALPHPLAAAAYYLGQPPGTPAGALLHPSQHMSPQSFYNPVFASLHM
MTPQQQQQFHHQLQIQQQHLQQQQLQLTHSSIAAVIPPPPPPTQSPHSQISPSIPQSHHK
QPSTPLSNPNHGSMSSNNSRNIHHPKANTPTSSSTIVHPTPQNALHYLANAASVASVAMS
PPNPSNHKNNAEIIEQGISVISQRTPTHVSNSSNSSTLLHTSANSGMQEVTLNKEKLNEH
INKLISQNEAIVENKELLLQKKYPKTLNRSRSFTNNGSSTSTSTNSAGNIQVLQTTTGGP
PSESPTNAKLAQAIVQKQQMQQQQQQQQQQQHQQQQQQQQQQHQQQQQQQLQQQHYIYQQ
QQQQLHKQRQLYHEKSNIEEVPTGLPLNGTSKHLVGKQLVQQQQLHPVAPPPVNNQAQFQ
QYRTIVTITPTQPRQQPHSASSTSISVNTSSAHHSLANVPLNLSAKTKQPEDSLDLNKPC
QGPLPQAPPPVTPRKRHSIEQTQSGQSQLLTPSLALNEASNSSNSNSSTPQPSTSAGKNP
HNNSIIKHLLLTARGLAVPTGTGEDAVYICPLCSLFFRTAEELQLHNSTYCQGSNSSANS
PASSPSHKYFRSNSMSLNMPDFKILSKNPLSLAKLAWSQLKTRPSNLVLNQLSASGTNTS
KNSSTHTTSATSTQPSSQSTTANTSSASGSSVLSKSQLPVNDIPIRFVDAPLPSPGPLLG
KTPLVDYTLNESKSKSEEVIITKMHDDPMYSHANMAEHPSSKRLKFEHLDKFSTKRPSLT
SGGEMQLLSAQELSKKDERFKRFTSSGGCMIPLSECDDVDKSPKMIRTPLLSGGSFQEVS
PKKETKLPLPLMPGNQLTPKLSLGLPSSNGPQHFQFPPINQITAFNPLTLALTEKVIPYV
PGIPGPNSLQPQLPQAPPTPTQQQKQQQTQQQQHLLNLPQTAATSKHLSRNVSPNRNQTP
SPMNMSTSVQGNSPDANKPTFGGVQNVPSEFNRAPPSTNMRNVRNWPSGVSTLAINTNAF
NSNNNNNSSNNKTAVAINEIAKPLKSFNFMRMADNLSPRKNSNGSEAKTPNSSAQMDAET
RHFNLDKMSREQLIIQQPPITNISKSLSPTNLTLTPLHVDTSVLSAAAAAGADNDTTSAE
AKVKSKFLRPTSLPLRPGTFTPKRHHGITPTANTLPLISPETPRPSKECVQLYLNGNSYT
YLGLKCSTKTFYCTLNCPQPSYVQDMHKLSMYSMWQQCAENNPHPLGLKPKEVMSLYDSR
QKTLIFTMAKGKKITYTLVTAQQTVMTPFISTRDKFYHHQLKPIALKDASLSSSPLKDNK
SSSESRSKDLSSSNSTSVSQTLEGGYESHENYTYVRGRGRGKYVCSECGIRCKKPSMLKK
HIRTHTDVRPYTCKHCNFSFKTKGNLTKHMQSKTHYKKCIELGLNPGPMPADGEFLEPDV
EFDQQSSTSAGGRTSSMGNGESDSDGDSSDNETESSNESDSARSNATQTLNVSAAEDNKS
HLEHEAARCLLTLSMTPPIHTQSLETSMANSQIAVTTVSSSFNVSSTPTPAIRRVISYTS
PKPPFDYQKQEQYYSNPKEPKPKINNSSATSFEAAPMDLTKPRAMDVIATQNPTTFSSNP
GPVQTQAQIRDVIFGVNKNESGFMKTMISVSSKVGRNYADNYEENHHKLNEDMMLYDYRR
EQTLQYYKIKQTQLSRGMTVNPNVVMSNSTPTTSTAVTTCVSLGLTSVTSVSDAVVVSSV
VTTASASPIELPPVAKKEVIIAPLQLPKIEIVEPPETPDVPASVPVTSATVTMPVVTTVT
EVPKSLKSSDEGEETDEEPPAKKLATKLDDKPAHNSNLPAAILQPGTTDFSGVLSGGASG
SQANNGNQPTRTVIVGEDGFTTNNNEILPVHPRVPQISNADGRPVCSICSKTFQKQSQLV
LHMNIHYMERKYKCDPCGVSFRTQGHLQKHERSEAHKNKVIMTSTFGVPTTSNPRPFECT
DCKIAFRIHGHLAKHLRSKTHVQKLECLQKLPFGTYAEIERAGISLTEIDTSDCENSLIS
LRVLAQKLIEKDPTSKLGSYTTPSGDNSNTGLVSQDSASEDGFTAAERAAANAIASLDNN
SAANTPRRANSTSEDESIAMALNNNLKRRLPGTYSNGEESDKEFQEQHQDKRLRPSDAQL
NNSHLNSASPTN
NT seq
8859 nt
NT seq
+upstream
nt +downstream
nt
atggcaagacgcaaaggaggcagtagaggaaaatctacagtaaatgcacgtaaaacagct
ttagagaatgcccgtgaaaaactcagagatgatcctggtggcacaagagaccaacaacag
cagaaggaacaaggccaggctgtgaatattaccaacatggaagctacaacaacggcgaat
acaacaacaacaacaaaatactacaataaaacaaaattacaaaataataacaaccatcaa
caaaataaaacaacaagtacaataacaaatacaaataaaaaaacacaacaaacaacatat
cgggaggcgaatgaaactcaaacaccacaaatggtagaaacagcaccaacaacacaaaag
aaacttacagccaaacaagctaaagcagcagcaaaattagcagcacaacaacaaaatgct
aaaagtaatacaaataatcaacagcagcagcagcaaccgcagcaacaacaacaaaatgaa
gcttccaaaaagatgatacaagagaaggaagctaaatcaaatgtaacaaatatacctgcc
acaacaacaacaaacacaacaacaaaatcaaacaccaccgccattaatgccaataataca
agtactacgcaacagcgtattacagcagcagcagcatcagcaaataatattagtaatagc
agtagtagtagtaataataataataatagaaataataataataataatagttcaaatatg
aatacaagtgataatagcatgaatagtaatattaaagatcagcagcagcagcaactggag
aacagcaccaaaagtgataatcaaacacagcaattgtcggataacaatacagcagcatcc
tcctcaatgtcttggaataattcaaaatatttgcataagaaattcaaaagattagccagc
acaacggagaatgatgctttacaagaggccgaaaagttgcgtaaaacctcaatgtcctca
gctagttcatcagtgtcgtcaccaccaccgcccccacaaacaaaaacaacaactcaacca
caacagcagcagcatcaacaatcattaacaattcctgctggtggtgttattaaaaatgac
gaacatttaacaaatggagtcttaaataaacatgaaacacaacagttgctgaatgaagct
cttccccacagcaacaacaaaagcgagatcattaacaagagctattcacaaaatcaagtg
ttgctgcagttagctcagcagcaaccaccacaacaacagcagcagcaacaacaacatgtt
gcagttgcttcatcaaattctacagagattagtaacagtaataaaactcaaacggtttca
tctgttagtagcagtggtggtggtattgttgcaacatctacgacaagctcatctactgct
ggcggtggtgggcgttataaatgtccatattgtgatttaagctgtacaaaaccctcggtg
ctccaaaaacacattcgagctcataccaacgaacgtccctatccatgtgaaatatgtggc
attgcttttaaaacgaaaagtaatttgtacaaacactgcagatctcgttcacatgcagcc
cgtcaaaagggcattgaagtatcgcctgatgccgatgatggtctctcagaccaagatgct
gatccggaattaagcaacagcagttctgagatgtttagtcgtacgggatctcccatcgag
gaactaagcaatcaaatattaacacaactgccaacacaaccggaacaacaaccatttgcg
caatacaatgagcctcaagtatcaatagctccatgtaatgactcacctgccccgttttca
gctgtgaagccaacatttttacagcaacaacctcagaaaatgccattgggttcgccagct
gctggtacactgcctcctgctgctgctgcagtgggcccgaataatacagcagcgactagt
ggccataagcagtccattgactataagccatacaagccaaaattccataatgcttctttg
tatgccacggcaaaagaagcagcagctgcagcagcagtaacatcctcaacaatgagtaca
actggtttggcggcggcagcactcgttacgccagtaccacaaaaggatgtggtcacatta
cagaagataccagaatctccgcatctcagtataaaccaacatcagcatttagttgctgct
ggcgagcaaaagattgtggtgccaacaagtgtccatctgccaccgccaccgcagcagtca
cccacccatatgcaacaccatccatcgttatcgcccagtacacaaatgaaactaaataat
cacatcagtacacaccagctgcaacagatgcagcaacaacaattgcaacatatgcaatcg
caatcacctcatcacttattgggaccgccaccacccgctaatgctctaccgcatccactg
gcagcggctgcgtattatttgggacagccgccgggtacaccggccggtgctttgttgcat
ccctcccaacatatgtccccgcaatcattttataatccggtttttgcttcactgcatatg
atgacgccgcaacaacagcagcaatttcatcaccaattgcaaatacaacaacaacattta
cagcaacaacaactgcaattaacacattccagtatagcagcagtgataccaccaccacct
ccgccgacacaatctccccactctcaaatttctccatcgataccccaaagtcaccataaa
caaccatccacaccgctctcaaatccaaatcatggttcgatgtcctccaacaattccaga
aatatccatcatcccaaagcaaacacaccaaccagcagtagcacaattgtacatcccact
ccccaaaatgctttacactacttagccaatgctgcatctgtggcttccgtagccatgagt
ccaccaaatccatccaaccacaaaaataatgctgaaatcatagagcaaggcataagtgtt
attagtcaacgtacaccgacacatgttagcaacagctccaattccagcacattgttgcat
acatccgctaattctggaatgcaggaagtgaccctgaataaagaaaaattaaatgaacac
attaacaaactgatatcacagaatgaggccattgttgaaaataaggaactattgttgcag
aaaaaatacccaaagactttaaaccgttctagaagtttcactaacaacggcagcagtacc
agtacttctacaaattcggccggcaatattcaggttttgcagaccacaactggtggccca
ccgagtgaatcgccgactaatgccaaattggcacaagccattgtacaaaagcaacaaatg
caacagcagcagcaacaacagcagcaacaacaacatcagcaacaacaacaacagcagcag
caacaacaccaacaacagcagcagcaacaattgcaacaacagcactacatctatcagcaa
cagcagcagcaattgcacaaacaaagacagttgtatcacgaaaaatcaaacatagaggaa
gttccaactggtttacctttaaatggtacttccaaacatttggttggcaaacaacttgtc
caacaacaacagctgcatccagttgctccaccaccggtcaacaatcaagcccaattccag
cagtatcgtactatcgtaacaatcacaccaactcagcctcgtcagcagcctcattccgca
tcatcaacatcaatttcagttaacacttcatcggcacaccactcattggctaatgtacct
ttaaatttatcggccaaaacaaaacagcccgaggatagtttagacttgaataaaccctgc
caagggccattgccacaagctccaccgcccgtcactccacgaaagcgtcactccatagaa
cagacgcaatctggacaatctcaattattaacacccagcttagcacttaatgaagcctca
aattcatcaaattccaattcgagtactccacaaccatccacttcagccggaaaaaatcca
cataataattccatcattaaacatttattgcttactgctcgtggtttggcggtgcccaca
ggaacaggcgaagatgccgtttacatatgtcccctgtgttctttattctttcgaacggcc
gaggagttacagctacacaacagtacttactgtcaaggtagcaatagtagtgccaattca
ccagcctcctcaccatcccacaaatatttccgttcaaattccatgtcattgaatatgccg
gatttcaaaattctctcaaagaatcccctgtctttggcaaagttggcatggtcccaactg
aagacgaggcccagcaatttggtcttgaatcaattaagtgcttcaggtaccaatacatcg
aaaaactctagtacgcacaccacatcggcaacatcgacccaaccaagttcccagtcaaca
actgccaatacaagttcagcttctggttcttcagttttaagcaagtcccaactgccagtg
aatgatatacccatacgttttgtggatgctcctctgccttcaccgggacctctattggga
aaaacgcccctagtggattatacgctcaatgaatcaaagtccaaatcagaggaagttata
ataactaaaatgcacgatgatcccatgtacagtcatgccaacatggctgaacatccctcc
agtaaacgcttaaaatttgaacacctagacaagttctcaacgaaacggccgtctctaaca
agtggaggtgaaatgcagctattaagtgcccaagaactatcaaaaaaggacgaacgtttt
aaacgcttcacttcttcgggtggttgtatgatacccttatcggaatgcgatgatgtagat
aaaagtcccaaaatgatacgtacacccttgttgtcgggtggcagttttcaagaagtgtca
cccaagaaagaaactaaattgcccttacccttgatgccgggtaatcaattgactcctaaa
ctcagtttaggtttgccctcctctaatggaccacaacattttcaatttcctcccatcaac
caaataacagcttttaatccattgaccttggccctgaccgaaaaggtaataccctatgtt
cctggtataccgggaccaaatagtttacaacctcagttgccgcaggcaccgccaacacct
actcaacaacaaaaacaacaacagacgcagcagcaacagcatcttttaaatttgcctcag
acagcagcaactagcaaacatttgtcaagaaatgtcagtcccaatagaaaccaaactcca
agtcccatgaatatgtcgacatctgtacaaggtaacagcccggatgctaacaagcctact
tttggcggtgtacaaaatgtgcccagtgaatttaatagagcgccaccctctaccaacatg
cgcaatgttagaaattggccatcaggagttagcactttagccattaatactaacgctttc
aacagcaacaataacaacaacagtagtaacaataaaacagcagtcgccattaatgaaatc
gcaaaacccttgaaatcctttaattttatgcgcatggccgacaacttaagtcctcgtaaa
aactccaacggcagtgaggcaaaaactccaaattcatctgcacaaatggatgcagaaact
cgacattttaatttggataaaatgtccagagaacaattgattatacagcagccccccatc
actaatatcagcaagtctttgtctcctaccaatttaacgcttactcctttacacgtggac
actagcgtgctaagtgcagctgctgctgctggtgctgacaatgatactacaagtgcagag
gctaaagttaagtcgaaatttttgcgccccaccagcttgcccttaaggccaggcactttt
acacccaaacgacaccacggtattactcccactgccaatacattgcctttgatctctcca
gaaacccccagaccttctaaggaatgtgttcaactgtatttaaatggtaattcatacacg
tatttgggcttaaaatgcagcaccaaaaccttttactgcaccctcaactgtccacagcca
tcttatgtgcaagatatgcacaagttgtccatgtacagcatgtggcaacaatgtgccgaa
aataatcctcatcctttgggtctaaaacccaaagaggttatgtccctttacgattccaga
caaaagaccctcatctttaccatggccaaaggcaaaaagatcacttacacactggtgaca
gctcagcagacagttatgaccccttttatcagcactcgagataaattctatcatcatcaa
ctgaagcccatagccctcaaggatgcatcattatcatcatcgcctttgaaagataataag
tcttcgtcggagtccagatcgaaagatctgtcatcgtcgaattccacttcggtatctcaa
actttagagggcggttacgaatctcacgagaattatacttatgtaagaggcaggggacga
ggaaaatacgtatgctctgaatgcggcataagatgtaagaagccctctatgctgaaaaaa
cacatacgcacccacacagatgttcggccctacacctgcaaacactgtaactttagcttc
aaaaccaaaggcaacctaacaaagcacatgcaatccaagacccactataagaaatgcata
gaattaggcttaaatccaggacctatgccagccgacggcgaattcttggaaccggacgta
gaattcgatcagcagtcatctacatcggctggtggcagaacctcctccatgggcaatggc
gaatccgactcagatggtgactccagcgacaatgaaaccgaaagcagtaacgaatccgat
tcagccagatcgaatgcaacacaaactttgaatgtttcggcggccgaagataataaatct
cacttggaacatgaagcagccagatgtttactcactctctccatgacaccgcccatacat
acacaaagtttagaaacttctatggccaatagccaaatagctgtgaccaccgttagctcc
agtttcaatgtatcctctacacctacaccggccatccggcgtgtgatatcatatacatcg
ccaaaaccaccatttgactatcaaaagcaagagcagtactattcaaatccgaaggaaccc
aaaccaaaaataaacaatagcagcgccacaagttttgaagcagcacccatggatttaacg
aaacccagagccatggatgtaattgccacacaaaatccaaccaccttttcgtcaaacccc
gggccagtacaaacacaggctcagatacgcgatgtcatctttggagttaataaaaacgaa
tctggttttatgaaaactatgatttcggtgtcatccaaagtcggccgcaattatgccgac
aattacgaggagaatcatcacaagctgaacgaagacatgatgctgtatgattatcgtaga
gagcagacgttgcagtactacaaaatcaaacagacacaactgagccgcggtatgacggta
aatcctaatgtcgtgatgtctaactcaacaccaaccactagcacagcggttactacatgt
gtttcgctgggcctgaccagcgttacctccgtctccgatgctgtagtagtttccagtgtt
gtaactaccgcttcagcgtcgccaattgaactgccgcctgtggccaagaaagaagtaata
atagcaccactacaattgcccaaaatagaaattgttgaaccaccagaaacgcctgatgta
cccgcctcagtaccagttacctctgcgacggttacaatgccagtggtaacgactgtcact
gaagtgccgaaatccttaaagtcttccgacgaaggtgaagaaaccgatgaagagccacct
gcaaagaaattggccaccaaactagacgataaaccagcacacaattccaatttaccggct
gccatactacagcccggtaccaccgacttttctggtgtgctatcgggcggtgcttcaggc
agtcaagcaaataatggcaatcaaccaacacgcaccgttatagtgggtgaagacggtttt
actacaaataacaacgaaattctgccagttcatccacgtgtaccacaaatttccaatgcc
gatggccgaccagtctgttctatatgctcgaaaactttccaaaaacaatcccagctggtg
ttacacatgaatatacattacatggagcgtaaatacaaatgtgatccatgtggtgtatcg
tttcgtacccagggtcatttgcagaaacacgaaagatcagaggctcacaaaaataaagtc
ataatgacttcgacattcggcgtgccaacgacctccaatccacgacctttcgagtgcacc
gattgtaagatcgcctttcgcatacacgggcatttggccaagcatttgcgttcgaaaacc
cacgttcaaaagctggaatgtttgcagaaattacccttcggtacatatgctgaaattgaa
agagccggcattagtctaaccgaaatcgataccagtgattgtgagaattcgctgatttcg
ttgcgtgtattggcccaaaagctaatcgaaaaggatcccacctccaaactgggcagctat
accacaccctcgggagacaactcaaatacgggcttagtttcacaagacagtgcctctgaa
gatggctttacggcagccgaacgagctgcagccaacgctatagcttcgctggataacaac
agtgcagcaaatacaccgcgtagagctaattccacatcagaggatgaaagcatagccatg
gctttgaataacaatctaaagagacgtttaccgggcacctacagcaatggcgaggagagt
gacaaagagtttcaagagcaacatcaggacaaacgtttgcgacccagcgatgcacagctc
aataattctcacctgaattcggctagtcccacaaactga
DBGET
integrated database retrieval system
