Calliphora vicina (urban bluebottle blowfly): 135963249
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Entry
135963249 CDS
T10781
Symbol
Patr-1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
cvj Calliphora vicina (urban bluebottle blowfly)
Pathway
cvj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135963249 (Patr-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvj03019
]
135963249 (Patr-1)
Messenger RNA biogenesis [BR:
cvj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
135963249 (Patr-1)
mRNA degradation factors
5'-3' decay
Decapping complex
135963249 (Patr-1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
135963249
NCBI-ProteinID:
XP_065371098
LinkDB
All DBs
Position
1:complement(82780691..82798270)
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AA seq
1071 aa
AA seq
DB search
MEDSFFGFDTSVPLDDDGGGQIAEPSEEEYDALNDETFGSAINGDWEEVHENLVRLTGDV
EGDGDTLDSGAHGVASGGYGSLSGMKNSRTQRFADSDLELNLSGMKLDDVDLNYGDNESM
SGLMGDTVKMDPSVWSLGVKDRTLGANSSAVVNRLSSNPEDFLREHFPTPFQHHQQQQQN
QDLNNQRQLQIKQQQSQNLSFGLPQFPKMSLPPQQQQQPKICTLEDIERNMIMQQTMPKQ
PQIQHHQQSQQQQHEAEMIAKQQKILHDILRHSSETPTPLQQQQQPQHLQHGNHQQQQQQ
QQQQQQQHQQMLSQQYSLLLAQKGPQGPRGFVNPNQQSPPRPSNNFANNLAQHPLGNLLQ
QQQQQQQDLPQPPPLHSQPQLGAAGSRLPPGFYFQQSGHPPLPPHPLLNQHGGLPNNFPN
QRPLPNAHLPVALNNFAMHPNFNAMRAAARGIHPAAILAQQHQQQQQQSVPNRIPGHLPN
SMMLLNQNPNTSNSSFNMFNMRLVQEIQQNHPLLQNAARQAQQLQQQQNCIQNHININNN
HNQRIGGGPNAAIGGSGIVGNQKQNHNMRRDGVSANGNLPHEEFDEYANLMSTREKHWLI
GIQLSQLNTDTPYIDDYYYTVYRERKVVLSGNLRHSQAHKDNQLNHPLTQPKGHAQLILV
QLGNKNGQRNGQHRERRNSENHNQNQEMKLPTYVFTPLKFENSLGKLQYGSVTAPRKIID
AEIMGNETSSTSITTGSNNAVAKDVTLVQTALSADAGTTLSSINVVGIKSETPALVQMTN
TVGDTTAANSQRKSRYILLHIETLYRILLKLEDLNNPNVIATILMKKKKESERIAALEQL
ENANKTPEERATDTSNNPSMKSKFNYEIETKDALIEKLVAGLQHDKVVAMMNVRKGKVLI
RRIMPNIESHDVRWNVWIGVFSSLQNVFKKDRDDTEGVLYSLYPEFNKQIKSANFEIIVK
ISSAITLNDKKSNGVFCSKFGISSLVCLILQAENIYVANDDATLTENNKDKWRQFLDQVA
SSLNRTIQNQTICAAIESDSIQPIMNHFARFKDLKLDSLLALITEAKQQIN
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atggaagactcattttttggatttgatacatctgtgccgttggacgatgatggtggaggg
caaattgctgaaccatcggaagaggaatatgatgctttaaatgacgagaccttcggatcg
gcaattaatggggactgggaagaagttcatgaaaatctagtccgtttgaccggtgatgta
gagggagatggggatactttggacagtggagctcatggtgtggcaagtggtggttatggc
tcgctgtccggaatgaaaaatagtcgaacacaacgtttcgcagactcagatcttgaatta
aatttgtcaggtatgaagttagacgatgtagatctgaattatggagacaatgaaagcatg
agtgggctgatgggtgatactgtcaaaatggatcccagtgtttggtctttgggcgtgaag
gatagaactttaggtgcaaacagttcagcggtagtaaatcgtttatcctctaatccggag
gattttttacgtgagcactttcccacgccgtttcaacatcaccaacaacaacaacaaaat
caagatctaaacaatcagcgacaacttcaaataaaacaacaacaatcacaaaatctgtct
tttggtttgcctcagtttcctaaaatgtcattgcctccgcaacagcagcaacaaccgaaa
atttgcactttggaagatatcgaacgtaatatgataatgcaacaaacaatgcctaagcaa
ccacaaattcagcatcatcaacagagtcaacagcagcaacatgaagctgaaatgatagcg
aaacagcaaaaaattttacatgacattttaagacattcatccgaaacaccaactcctttg
caacagcaacaacaacctcaacatctacaacatggaaatcatcaacaacaacaacaacag
cagcagcagcaacaacaacagcaccagcaaatgctatcccaacaatattcgctattattg
gcgcaaaaaggtccgcagggtccgcgaggttttgttaatcctaatcaacaatcgccccca
aggccatcgaacaattttgccaataatttggctcaacatcctttaggaaatttactacag
caacagcaacaacaacaacaagatctaccgcagccaccaccactgcattctcagcctcag
ttaggtgctgcaggaagtcgactgccccccggattctattttcaacaatctggacatcct
ccgttgccaccacatcccctacttaaccaacacggtggattgccaaataattttcccaat
caacgtccactgccaaatgcacatctcccagttgcactcaataacttcgctatgcatcca
aactttaatgcaatgcgtgcggctgcacgtggcatacatccagcggcaattttggcacaa
caacatcaacagcagcaacagcagtcagttccaaatcgtatacccggtcatctcccaaat
tcgatgatgcttcttaatcaaaatccaaacacgtcgaattcctcattcaacatgttcaat
atgcgtcttgtacaagaaattcaacaaaatcacccactgctccagaacgccgctcgccaa
gctcaacagcttcagcaacaacagaattgcattcaaaatcacattaacatcaataataac
cacaatcagcgtattggcggtggtccaaatgctgcaattggcggcagtggcatcgtagga
aatcaaaaacaaaatcataatatgagacgtgacggagtgtcggctaatggtaatttgccg
cacgaagaattcgacgagtacgccaatcttatgagcactcgtgaaaaacattggctgatt
ggtattcaattgtcgcagttaaacactgacacgccatacattgacgactattattacact
gtctatagggaacgaaaggtggtcttgagtggaaatttgcgtcacagccaggcacacaag
gacaaccagcttaatcatcctttaactcaacccaaggggcacgctcaacttattctagtg
cagctgggcaataagaatggtcaacgaaatggccagcatcgtgaacgtcgtaattctgaa
aatcacaaccaaaaccaagagatgaagttgccgacatatgtttttacacctctcaaattt
gaaaattcgcttggtaagttacagtacggcagtgtaacggcaccacgtaaaattattgat
gctgaaattatgggtaatgaaacatcatccacttcgatcacaactggatcaaataacgcc
gtcgctaaggacgttacattagttcaaacggcattgtctgcagacgctggtacaactctg
tcaagcatcaatgttgttggtattaaatcggaaactccggctttggtgcagatgacaaat
acagttggcgatacgacggcagccaatagtcagcggaagtcccgttatattctgttgcat
attgagactttgtatcgcatcctgctgaagttggaagacctaaacaatccgaatgtgatt
gcgacaatactgatgaagaagaaaaaggaaagcgaacgcattgcagccctagaacaatta
gaaaatgccaataaaacaccagaggaacgagccacagacacatctaacaatccatctatg
aaaagcaaatttaactacgaaatcgaaacaaaagatgctcttattgaaaaattagtggca
ggattgcaacatgacaaggtcgttgccatgatgaatgtccgcaaaggaaaggttttaatt
cgtcgcatcatgccgaatattgaaagccacgacgtacgttggaatgtgtggattggtgtt
ttcagctctttgcaaaatgtttttaaaaaagatcgcgatgatacagaaggcgtattatac
tccctgtatcctgagtttaataaacaaattaaatctgctaactttgagattattgtaaaa
atttcttcagccattacacttaatgataaaaaatcgaatggcgtcttttgtagtaagttt
ggcatatcatcattggtttgcttaatattacaagctgaaaatatttatgtagcaaatgac
gatgcaaccctaacagagaacaataaagataaatggcgtcagtttttggatcaagttgct
tcatctttaaatcgaacaatacagaatcaaacaatctgtgccgccatcgaatccgattcc
atacaacccataatgaatcattttgcacgtttcaaagatttaaagctggattcactgttg
gcgttaattaccgaagccaaacaacaaatcaattga
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integrated database retrieval system
