| Entry |
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| Symbol |
rpoC
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| Name |
(GenBank) DNA-directed RNA polymerase subunit beta'
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| KO |
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| Organism |
cvl Chloracidobacterium validum
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:cvl00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J8C06_01850 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:cvl03021]
J8C06_01850 (rpoC)
03400 DNA repair and recombination proteins [BR:cvl03400]
J8C06_01850 (rpoC)
Enzymes [BR:cvl01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J8C06_01850 (rpoC)
Transcription machinery [BR:cvl03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J8C06_01850 (rpoC)
DNA repair and recombination proteins [BR:cvl03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J8C06_01850 (rpoC)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
1:440757..444962
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| AA seq |
1401 aa
MFRYQDKQTVAPDFEAIRISLASPDKIRSWSRGEVTKPETINYRTFKPERDGLFCARIFG
PITDWECLCGKYKRMKYRGVVCDKCGVEVTLSRVRRERLGHIELASPCSHVWFFKGLPSR
IGHLLDIPLRDLEKVLYYESYIVVDAGDMPDIKEKDLLTDEQYRKLFDAYPGQFIARMGA
EAIKTLLERVDCDALAEELRQKMREETSQQKKLKLAKRLKVVDAFRRSGNRPEWMILDVI
PVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLRKLLDLKAPEVIVRNEKRMLQEA
VDALFDNGRRGRVLRGANNRPLKSLSDTLKGKTGRFRQNLLGKRVDYSGRSVIVVGPELK
LHQCGLPKKMALELFKPFIYHQLEKQKHAQTIKQAKEMVDRQAPEVWDILEEVIREHPVL
LNRAPTLHRLGIQAFEPVLVEGKAIKIHPLVCTAFNADFDGDQMAVHIPLSHEAQIEAAV
LMRADNNILSPANGQPIAVPTQDVVLGCYYLTYERKDDPKGGRAFASLDDVVIAHDAGVV
NTQSPIKLHYEGLLIDLEQERNQQDLLRATPRHVRQVISTTVGRVIFNQSLPEGMPFVNG
VLKKKGLQSLVSYCQLNHGLETTVKMLDSLKSMGFLYAMKAGISIGIDDLVTPPRKAELI
AAADREVARFQKEYEEGSITDGERYNKVVATWSQTTEAVAKEMSEAMKSSEKNNNELNPI
MVMADSGARGSAQQIRQLAGMRGLMAKPSGAIIEKPIRANFREGLDVLEYFISTHGARKG
LADTALKTADSGYLTRRLVDVAQDVIVSEEDCGTIRGIWVEAISEGGEIIEPLRDRIIGR
VALDDIVDPVTGDVLVQANQEITEKLAAEIQDAGGIERVKLRSVLTCEARRGVCIKCYGR
NLATGRMVELGEAVGVIAAQSIGEPGTQLTMRTFHLGGAVSGSSEQSSHEARKAGRVKFE
DLRTVTGRDGKLVAMNRTGYIVLIDENRSNREIGRYQVVYGARLAVTDGQLVEDGDTLAT
WDPYTFSILTEVEGTVRYHDLIEGITIQEDIDANTGNRSMIVREATDEKRQPRIEVLADD
GKTVLKAYQMPVRANLSVRDGDRVLPGDVIAKIPRESTRAKDITGGLPRITELFEARKPR
ETAVMAEIDGVVKFGNIVKGQRKVQIIGDDGETREYSIPKGVNMFIQEGDRVKAGEPLVD
GPLNPHDILAIQGMDALQRYLVNEIQEVYRLQGVNIADKHIEVIVRQMLRWVRVKDVGDT
DFLIDEQVDRFRFEDENNRVMEAGGQRATAEPLLLGITKASLSTESFISAASFQETTRVL
TEAAISGRVDYLRGLKENVIMGRLIPAGTGMEYYRRVRLYEEKRFDMDDNRSDSEAYHFD
DAMTQMVEEDIQIRKAAKASE |
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| NT seq |
4206 nt +upstreamnt +downstreamnt
atgttcagatatcaggacaagcaaaccgtcgcgcccgactttgaagccattcggatttcg
ctcgcctcgccagacaagatacggtcgtggtcgcgtggcgaagtaaccaagccagagacc
atcaactatcggacgttcaagccggaacgggacggtttgttctgcgcgcggatttttgga
cccatcaccgactgggaatgcttgtgcggcaagtacaagcggatgaagtaccgcggggtg
gtctgcgacaagtgcggtgtggaagtgaccctctcgcgggttcggcgggaacggctgggg
catatcgagctggcctcgccctgctcgcacgtctggtttttcaagggactccccagccgg
atcggccacttgcttgacattccgctgcgcgacttggagaaggtgctgtattacgagtcc
tacatcgtggtggatgcgggcgatatgccggacatcaaagagaaggacctcctgacggat
gagcagtatcgcaagctctttgacgcctatccggggcagttcatcgcgcggatgggggcg
gaggcgatcaaaacgctcctggagcgcgtggactgtgatgccttggctgaggaactgcgc
cagaagatgcgcgaagagacctcacagcagaagaagctcaagctggcgaagcggctcaag
gtcgtagatgccttccggcgttcgggcaaccgtccagaatggatgattctcgatgtcatt
ccggtcatcccgcctgagctgcgtcccctggtgccgctcgacggcggacgcttcgccacc
tcggatttgaacgacctctaccggcgcgtcatcaaccgcaacaaccgcctgcgcaagctg
cttgacctcaaagcgccggaagtcatcgtccgcaatgagaagcgcatgctccaggaagcc
gtggacgcactttttgacaacggccgccgggggcgcgtcctgcgtggcgccaacaaccgt
ccgctcaagtcgctttccgacacactcaaagggaaaaccggacgctttcggcagaacttg
ctgggcaagcgggtggattattccggtcgctcggttattgtcgttgggccggaactcaag
ctgcatcagtgcgggcttccaaagaaaatggcgctggagctgttcaagccattcatttac
caccagctcgagaagcaaaagcacgcccagacgatcaagcaggccaaggaaatggtggat
cgccaagcgccagaggtctgggacatcctggaggaagtcattcgggaacatccggtgcta
ctcaaccgtgcgccgacgctccaccggctcggtattcaagcctttgagccggtgctggtc
gagggcaaggccatcaagattcaccccttggtgtgcacggcgttcaacgccgattttgat
ggcgaccagatggcggttcacatcccgctgtcgcacgaagcccagatcgaagccgctgtc
ctgatgcgagcggacaacaacatcctgtcgccggccaatgggcagccgattgccgtgccc
acccaggatgtcgtgcttgggtgttactatctgacctacgagcgaaaggacgatccgaaa
ggcggacgcgcctttgccagtctcgatgatgtggtcatcgcccacgatgctggcgtggtc
aatacccagtcacccatcaagctccactacgaggggctgctcattgatctggaacaagag
cgcaaccaacaagacttgctccgggcaaccccgcgccatgtacgacaggtcattagcacc
acggttggccgggttatcttcaatcagtctctgccggaggggatgccgtttgtcaatggt
gtcctcaagaagaaaggtctccagtcgttggtgagttactgtcagctcaaccacggcttg
gaaacgacggtgaagatgctcgattcgctcaagtcaatgggcttcctctatgcgatgaag
gcgggtatctcgattggaattgacgacctcgtgacgccgccgcgcaaggcggaactcatt
gctgcagccgaccgtgaagtggcgcgtttccaaaaggagtatgaggaaggtagcatcacc
gacggagagcgctacaacaaggtcgtggccacttggtcgcagacgacggaagctgtcgcc
aaggaaatgagcgaagccatgaagtcgtctgaaaaaaacaacaacgaactcaatcccatc
atggtcatggcggattccggggcgcgtggctcggcccagcaaattcgtcagttggccgga
atgcgcgggctgatggccaagccgtcgggcgccatcattgaaaagcccattcgcgccaac
ttccgcgaaggcttggacgttttggagtacttcatctcgacgcacggggcgcgcaaggga
ctcgctgacaccgcgctcaaaacagccgattcaggttatttgacgcggcggctcgtggat
gtcgcgcaggatgtcatcgtgtcggaagaagattgcggcacgattcgtggcatctgggtc
gaagccatcagtgaggggggcgaaatcatcgaacccctgcgcgaccgcatcatcgggcgg
gtggcgcttgacgacatcgttgacccggtgacaggggacgtgctggtgcaggccaaccag
gaaatcaccgaaaagctggcggccgaaattcaggatgccggcggcatcgagcgcgtcaag
ctccgttcggtactaacctgtgaagcgcgtcggggcgtatgcatcaagtgctacggccga
aacctggcaaccgggcgcatggtcgagttgggcgaggccgttggcgtcattgccgctcaa
tccatcggcgagccggggacgcagctcaccatgcgcaccttccacttgggtggcgccgtg
agtggttcttccgagcagtcttcccacgaggcccgcaaggccgggcgcgtgaagtttgaa
gacctgcgcacggtgactgggcgcgatggaaagctggtggcgatgaaccgcaccggatac
atcgtgctgattgatgaaaaccgaagcaatcgagagattgggcggtatcaagtcgtctat
ggcgcgcgacttgccgtgaccgacggccagctcgtcgaagatggagataccttggcgacg
tgggacccgtacaccttttcaatcctgaccgaggtggaaggcacggtgcggtatcacgat
ctcatcgagggcatcacgattcaggaagacattgatgccaacaccggcaaccgcagcatg
attgtccgtgaggcgacggatgagaagcgacagccgcgcatcgaagtcctggctgatgat
ggcaagaccgtcctcaaggcctatcagatgccggttcgggcaaacctgagtgtgcgtgat
ggggatcgggtgttgccgggcgatgtcatcgccaagattccccgcgagtcaacccgcgcc
aaggacatcaccggcggtttgccccgcatcacggagctgttcgaggcccggaaaccacgc
gaaacggctgtgatggctgaaatcgatggcgtggtcaagttcggcaacatcgtcaagggc
cagcgcaaggtgcaaatcattggcgatgacggtgaaacgcgcgagtactcaatcccgaaa
ggcgtcaacatgtttatccaggaaggcgaccgcgtcaaagccggtgagccgctcgtggat
ggaccactcaacccgcatgacatcctggccattcagggcatggatgcgctccagcggtat
ctcgtcaatgaaattcaggaagtctatcgcctgcaaggcgtaaacattgccgacaagcac
atcgaggtcattgttcgccagatgctgcggtgggtgcgcgtcaaagatgtcggcgacacc
gattttctcattgacgaacaagtggatcgcttccgcttcgaagatgaaaacaaccgggtg
atggaagctgggggacaacgagcaacggcagagccactcttgctaggaatcaccaaggct
tcactgtcaacggaaagctttatctcggcggcgagtttccaagagacgacccgcgtattg
acggaagctgccatctctggtcgcgtggattacctgcgcggtctcaaggaaaacgtcatc
atgggacgcctcattccagccggcaccgggatggagtattaccgccgggtacgcctctac
gaagaaaagcgctttgacatggatgacaaccggtctgattctgaagcctatcacttcgac
gatgccatgacgcagatggtcgaagaggatattcagattcggaaggcagcgaaagcgagc
gaatag |
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