Chloracidobacterium validum: J8C06_08380
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Entry
J8C06_08380 CDS
T07355
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cvl
Chloracidobacterium validum
Pathway
cvl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J8C06_08380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvl03019
]
J8C06_08380
Messenger RNA biogenesis [BR:
cvl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
J8C06_08380
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RNase_J_C
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
Lactamase_B_3
Motif
Other DBs
NCBI-ProteinID:
QUW02370
UniProt:
A0ABX8BBC7
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All DBs
Position
1:2001857..2003524
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AA seq
555 aa
AA seq
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MTDTRLEIIPLGGLGEFGMNCMVMRFGEDIIVIDAGIMFSEVGHFGVDSMTPDFTFLERH
REQVRAVILTHSHEDHIGSLSFLLKKVNVPVYGTPYTLRIVEPRLEEHHLLPATALRVVQ
AGETVEVGAFSIEYIRVSHSTVDCCALAITTPIGTIVHTGDFKFDATPVCGNAIDVARLR
TIGQRGVLALLSDSTNVERPGQMPSERVVIPALEEIFDRARRRIFVSCFASSIHRIQIMF
DLAQQFGRQVVAVGRAMERNIEIAERTGFLDTADLLVNPKDFKHFDPSEIVVLASGCQGE
PMGAMARIADRSHRQAWMEAGDTVVLSARQIPGNEKAISKLINRCYRNEVEVIDSTQARI
HVSGHGAQEDLRLMLEAIRPKYFIPIHGEYRQLYRHKLFACQTLGYAPDRVLLIESGDVV
LLDGETAQIGDKIAVNRVYIDDTCSLELDETLLRDRKRLAYEGVVIAGVAVEETTGALLG
PPEITTRGYLGVDGEEEEIAELRDVALSAVEAMPPAERVNGGKEHFQEHLRLALKRHIMR
LTGQKPTIVPLVVVV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
gtgacggacaccagactggaaattattccgcttggcggtctcggcgagtttggcatgaac
tgcatggtcatgcgctttggcgaagacatcatcgtgattgacgccgggattatgttttct
gaggtcggtcacttcggcgtggactccatgaccccggattttacctttctcgaacgtcac
cgcgaacaggtgcgcgccgtcattctcacgcacagtcacgaagaccatatcggatcactt
tcgttcctactcaaaaaagtcaatgttccggtttatggaacgccctacacgctgcggatt
gtcgaaccccgcctggaggaacatcacctgctgcctgcgacagcgctgcgggttgtccag
gccggggagacggtcgaggtcggcgcgttttccatcgagtatattcgcgtctcccactcc
actgtggactgctgcgcgctcgccatcacgacgccgattggcaccattgttcacaccgga
gatttcaaattcgatgctacaccggtttgcggcaacgccattgatgtcgcccggctgcgc
accatcggtcagcgcggcgtcttggccctgctctctgactcgacgaatgtcgaacgccct
gggcaaatgccttccgagcgcgtcgtcattcccgcactggaagaaatttttgaccgcgcc
cgccggcgtatcttcgtgagttgttttgcctcaagtatccaccgcattcagatcatgttt
gacctggcccagcagtttgggcgacaggtcgtagccgtcggccgcgccatggagcgcaac
atcgagattgccgagcgcacggggtttctcgacaccgcggatttactggttaacccaaag
gatttcaagcacttcgacccgtctgagattgtcgttttggcatctggctgccagggtgag
ccaatgggcgcgatggcgcgcattgccgaccggagccaccggcaggcctggatggaagcc
ggtgacacggtggtgctttcagcccgccagattccaggtaacgaaaaggccatctcgaag
ctcatcaaccgctgctaccggaatgaagtcgaggtgattgattccacgcaggcgcgtatt
catgtgtccggtcacggcgcgcaggaagacctccgcctcatgctcgaagccatccgtccc
aaatacttcattcccattcacggcgaataccggcagctctatcgccacaaattgtttgct
tgccaaacgcttggctatgcgcctgaccgggttctgctcatcgagagcggcgatgttgtg
ctcctagacggcgaaacggcgcagattggcgacaagattgccgtgaatcgggtgtatatt
gacgacacctgctcactggaactcgatgaaacgctgttgcgcgaccggaagcgtctggcg
tacgaaggcgttgtcattgccggcgtcgcggtggaagaaaccaccggagccttgctcggc
ccgcctgaaatcacaacccgtgggtacttgggcgtagatggagaggaagaagaaattgcc
gaactgcgcgacgttgccctgtccgcggtagaggcgatgccgccagccgaacgggtcaac
ggcggcaaggagcacttccaagaacatcttcgactggccctcaagcgccacatcatgcgc
ttgaccgggcaaaagccaaccatcgtgccgctcgtcgttgtcgtttag
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