Crassostrea virginica (eastern oyster): 111100321
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Entry
111100321 CDS
T09197
Name
(RefSeq) protein PAT1 homolog 1-like isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111100321
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111100321
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111100321
mRNA degradation factors
5'-3' decay
Decapping complex
111100321
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
DUF7527
Motif
Other DBs
NCBI-GeneID:
111100321
NCBI-ProteinID:
XP_022287764
UniProt:
A0A8B8ACW6
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Position
6
Genome browser
AA seq
905 aa
AA seq
DB search
MEDTFAGINSYNSALGAGVGNMNDLMEAPEEEEDIDLMNDETFGGDIDDGFDWEEEHEKL
SEVIEVGDKVLYGRPSRDQDYQNNYVSQEEYMEQSIQRLVVEDEEIDDPAIVNVSKNRPI
PKNHKNLEDLFGPASPPALLDTEHLVSPSSRNIWGSPVKEAYMPPAVNNLQTLFEFAKAA
SGSSHGKGVSGRTLEELENQILPGTKGHAMTAEDLERQLRGEGSKPPPLPEPHLQHPPPG
FLPGSPGPRNQTPQRMPPGYGPYMPVMDGRRSPMGQVPYPPRGGEGPPGPPPPGPIPPHL
LNGRRSPLNSVSTTPQNHRSSPVLLHRLSPLAAGIGHASPSPGRVSPVTVIMRGSPSPSP
PPTTPQVALLSAYARGALQSLMGNRMPTSPIGIPRPAMMRGPPPHSPYNSPGPRQSPHGG
HYGPPPGSPYGPPPPGSYPPPHNSPGGPRPPHPMGHSDPRRGRGRGHFRGHPRGNYGHMD
NREGYSEGHDPNKFDQGYYQNNRDHRRDYQDNRREYDRRRYYHYNPDEDRKRSVDAYAGL
MTQKEKDWIIKIQLIQLQTENPYLDDFYYTTYTLKKKAEERQKRQQNGVMEDKDGELNLI
IPAMAKLETRPYKPAQFEGSLGRLTTSSVHNPRQIIDVRSDAKPHGEESESKNVSKELRR
SRQLLMEIENGYNLLLDVDDIEKKILALPEEARKPLFEDRKNMLTDLYKYLLCPGNNDHF
LSIMSIRKGRKLVARVLPLLEKSQSENLVQLLLRNMAYLIKKDQGVEGLMCLHDSVIRVI
DSCDLQHLVDFATELKESRQNQSKTTAVAIQNKFGSSVVCSLLHRGEVLHANMSPLDMDN
QLESLWCQFVHEFAGILAVVPTESLVHPKQHHASITEHFDRLLNKKLIAVIEDKVKLFTE
PERAA
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atggaagacacgtttgctggtataaactcatacaactctgccctaggggcaggggttggt
aacatgaatgatttaatggaagcaccagaggaggaagaagatatagatctcatgaatgat
gaaacctttggaggggatattgatgatggttttgactgggaagaggagcatgagaagtta
tcagaggtcatcgaggtcggcgataaagtcctttacggccgaccgtctcgggatcaagac
taccagaacaactacgtcagtcaggaggaatacatggagcagagtattcagcgactagtt
gtagaggatgaagaaattgatgaccctgccattgtgaacgtcagcaaaaaccgacccatt
cctaaaaatcataaaaacctggaggatttgtttggtcccgcctctccacctgctctactg
gacactgaacacctggtctccccatccagcaggaatatctgggggtccccggtgaaggag
gcctatatgccccctgcagtcaacaatctccagactttgttcgagttcgctaaagcagct
tcaggttcctctcatggcaaaggtgtttctggaagaacattggaagagctagaaaaccag
atcctgccagggacgaagggccatgccatgactgcagaggacctggaacgtcagctgagg
ggggagggatccaagcccccacccctcccagagcctcacctacagcacccacccccagga
tttctacctggatcacctggccctagaaaccagacaccacagcgcatgccccctggatat
ggcccctacatgccagtgatggacggccggcggtcaccgatggggcaggtgccctacccc
ccacgaggaggggagggccccccaggaccaccaccaccaggccccatcccaccacaccta
ctcaatggtaggagatccccactcaattctgtctccaccacccctcagaatcatagatcc
tcacctgtcttgttgcataggctttctcccttggctgcaggcattggtcatgcttcaccg
tcccctgggcgggtatccccggtgacggtcattatgagagggtcgccctcgccctcaccc
ccacccaccacaccccaagtcgccctcttgtcggcctatgcccgaggggccttacagagt
ctcatggggaaccgaatgcctacttcacccataggaattccccgccccgccatgatgaga
gggccccctccccacagcccctacaacagcccggggcccagacagagcccacatggaggg
cattacggcccccctcccggcagtccgtacggaccaccccctcccgggtcctaccctccc
cctcataacagtcctggtggaccgagaccacctcatccaatgggccattctgatcccagg
agaggacgggggcgaggtcacttcagagggcatcctcgaggaaattatggtcacatggac
aacagagaaggttactcagaaggtcacgacccaaacaagtttgatcaaggttattaccag
aacaatcgcgaccatcgccgtgattaccaggacaaccgacgagagtacgaccgacggaga
tactaccactacaatccggacgaggaccggaagcgctcggtggacgcctatgcagggctt
atgacccagaaagaaaaagactggatcatcaaaatccagctcatccaactccagacggag
aatccgtatctggatgacttctactacacgacctacacgttgaagaagaaggcagaggag
cggcagaagaggcagcagaatggagtgatggaggacaaagacggagagctgaacctgatc
atccctgccatggctaaattggagacccgcccctacaaaccagctcagtttgagggctcc
ttgggcagactaaccacctcaagtgttcacaatccccgacaaattatcgatgtcaggagt
gatgccaaaccccacggtgaggagagcgagtccaaaaatgtctccaaagagctgagaagg
agcaggcagctactgatggaaatagaaaatggatataatcttctactagatgttgatgac
attgaaaagaaaattttagctttgccagaagaagcaaggaagccattatttgaggacagg
aagaacatgttgacggatttgtacaaatatctgctgtgtccggggaataacgaccacttc
ctgtccatcatgtccatccgcaaagggaggaaactggtggcccgcgtcttaccactactg
gaaaaaagtcagtcagaaaacctggtacaactgctgctgagaaatatggcctatctgatc
aaaaaagaccaaggcgtggagggactgatgtgtctgcacgactcggtgatccgtgtgatt
gacagctgtgatctccaacaccttgtggatttcgccaccgaactgaaggaatccagacaa
aaccagtccaagacaaccgctgttgcaatacaaaacaagtttgggagctcggtggtgtgc
agtctgctccacagaggggaggtcctccacgccaacatgtcccccctagacatggataac
cagctggaatcactatggtgtcagtttgtccacgagtttgccggcatcctggcagtggtc
ccgacagaatccctggtccaccccaaacagcaccatgcctccatcactgaacacttcgac
cgactgctcaacaagaaactgatcgcagtcatcgaagacaaagtcaagctattcaccgaa
ccggaacgggcagcatga
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