Crassostrea virginica (eastern oyster): 111100616
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Entry
111100616 CDS
T09197
Name
(RefSeq) exosome complex component CSL4-like
KO
K07573
exosome complex component CSL4
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111100616
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111100616
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
111100616
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
111100616
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GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
GULLO2-like_3rd
ECR1_N_2
Motif
Other DBs
NCBI-GeneID:
111100616
NCBI-ProteinID:
XP_022288383
UniProt:
A0A8B8AD17
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Position
6:31249199..31253263
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AA seq
197 aa
AA seq
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MAAPTIFVPGQRICRLEENCEVGNGTYSRNGYVYSSLAGYLQTSGGEDGKSLIEVKTQEE
QNVVPSVDAVVTTRITNVNPRFCKCLILSVGKIPLKEPFRGQIRKEDVRATEKDKVEMYK
CFRPGDIVVAKVLSLGDAHSYLLSTAENELGVVIATSEAGATMEPISWCKMKCPKTLSEE
FRKVAKVQPKYAQYSGT
NT seq
594 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgcccacgatatttgttccaggtcagagaatttgtcggttggaggagaactgc
gaagtgggcaatgggacctactcgaggaatggctatgtgtactccagtctagcaggttac
ctacagacttcaggaggtgaagacggaaagtctcttattgaagtgaaaacacaagaggaa
cagaatgtagttccttcggtggatgctgtggtcacaacaaggataacaaatgtcaaccct
agattttgcaaatgtttaattctcagtgttggaaagattcctctaaaagagccatttcgt
ggtcaaattagaaaagaggatgtgagagcaacagagaaagataaagtggaaatgtacaag
tgctttagaccaggagacattgttgttgccaaagttttatccctaggagatgcccattct
tatttacttagtacagcagaaaatgaattaggggttgtcatagcaacaagtgaagcagga
gccactatggaacccattagctggtgcaaaatgaaatgtcccaaaacactatcagaagaa
tttcgaaaagttgccaaagtacagcctaaatatgctcagtattcaggaacataa
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