Crassostrea virginica (eastern oyster): 111100649
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Entry
111100649 CDS
T09197
Name
(RefSeq) ATP-dependent DNA helicase Q-like 1
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111100649
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111100649
03400 DNA repair and recombination proteins [BR:
cvn03400
]
111100649
Enzymes [BR:
cvn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
111100649
Messenger RNA biogenesis [BR:
cvn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
111100649
DNA repair and recombination proteins [BR:
cvn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
111100649
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
ResIII
Motif
Other DBs
NCBI-GeneID:
111100649
NCBI-ProteinID:
XP_022288444
UniProt:
A0A8B8AES5
LinkDB
All DBs
Position
6:29061669..29063620
Genome browser
AA seq
388 aa
AA seq
DB search
MTFTTNENSPFLCLFGSCGKMAEDAVKKVLKMFDIVNLKDEQKKMLDLLLKREDCIAVLP
TGYGKSLPYQMLVPLRREMGTDDKNTKVIVCSPLVAIMRDQCERLNGILGVRAVYKGNED
NQIDMGKFDYLFASPEYLVGDKKFRATLQTFDVSTIVVDEFHTISTWGEEEGKQAFRKWF
SHIGELRSLFPKASILALSATCTKKISKRVSKILQLPFDKNEIRVSPDKENIKIVVQKIP
NSVEMAMVWLVDALSENTLPRTILYCTSIKDASNIYSYINAELPLCYEVQMFHSETPPEI
KTRILNELVDEKSTIKLVVATSALGMGVDIRKYCSVILYGPPQNIVDVVQEIGRVGRDGT
EALALILYNSYHLRTVDAEVKEIFQTTM
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgacctttacgaccaatgaaaactctcctttcttatgcctgtttgggagttgcggcaaa
atggcggaagatgcagtgaaaaaagttttgaagatgttcgatatcgtgaatttgaaggat
gaacaaaagaaaatgttggatttgctgttaaaacgagaggactgtattgcagtgttgcct
acaggctatggaaaatctctgccttaccaaatgcttgtccctttaagacgtgagatgggt
acggacgacaaaaacacaaaggttatcgtgtgttccccattggtggcaataatgcgtgac
caatgcgaaaggcttaacggcattctaggcgttagagctgtttataaaggcaatgaagac
aatcaaatagatatgggcaaatttgattatctctttgcctcaccagaatatctagttgga
gataaaaagttccgtgccacattacaaacatttgatgtgtcaaccatagttgtggatgaa
tttcataccatctcaacctggggtgaagaggaaggaaaacaagccttcagaaaatggttc
tctcacattggagagctgaggtcactctttcctaaagcatccattcttgctttaagtgct
acgtgtactaagaaaatttccaagcgagtttcaaagattctccaacttcctttcgataaa
aatgaaattagagtttctccagataaagaaaatatcaagatagttgttcaaaagattcca
aattctgttgaaatggccatggtttggttagttgatgcattgtcagaaaatactttaccg
aggacaattctttactgtacatcaattaaagatgcatcgaacatatactcatacattaat
gcagaactaccattatgttatgaagtgcagatgtttcattcagagacgccccctgaaatc
aaaacaagaattctaaatgaattggtggatgaaaaaagcactatcaaacttgtggttgct
acgagtgcattgggaatgggagtggacatcagaaaatattgtagtgtcatcctctacggt
ccccctcaaaacatagttgatgttgtacaggaaatcggtagggtgggtcgtgatgggact
gaagctttagctttaattttatacaactcatatcatttgagaacagttgatgctgaggtg
aaggaaattttccaaaccactatgtga
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