Crassostrea virginica (eastern oyster): 111100904
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Entry
111100904 CDS
T09197
Name
(RefSeq) probable ATP-dependent RNA helicase DDX58
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cvn04054
]
111100904
Enzymes [BR:
cvn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111100904
Pattern recognition receptors [BR:
cvn04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
111100904
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RIG-I_C-RD
CARD_2
RIG-I_C
CARD
Cas3-like_C_2
IstB_IS21
AAA_19
AAA_5
Terminase_6N
AAA_22
Yippee-Mis18
Motif
Other DBs
NCBI-GeneID:
111100904
NCBI-ProteinID:
XP_022288784
UniProt:
A0A8B8AFP3
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All DBs
Position
6:complement(32081636..32100147)
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AA seq
1212 aa
AA seq
DB search
MAGSLDLGSAPSLGHDSLLKSDESNSLRMDAGAKLGSSLFKDGSRPKGVSQDGTKSGEDS
AGKSHPQTSGPKQVPPVLHQSRGGQSVKGGDTYRSVDVQEEMFSSLSPEDDSVPQYIQLY
RPMIVKCVDCAPLLPSLRDIISDQGERIRIKNASKNEGTQAGMELFLNILEKKVDHPDRW
YRFVHALKDADFEYVAKVLERQEKIDTRVFTMQIRLIDIFADVLYKKLKPSEIIVDLYSE
RVVNKDIFDAVKRDEELNGESSATIVLIDNIFRCHRNWYPIFLEVLCRHKYMDIVKEIDD
SFLEKRQMKKVGGENQENSSDSMETVEKAVGAPSKSRQLEREFSDNSVSPSKQEQEKNTS
IQENYLSETFESPQGVNNLSGNSMQESIDVEFNQLNKDLDSSLRLGDGEETGRKRVDDDA
GDNRGSAPIRGNISLSSTTDNRSFPVPNNDLTNFSLGMDSMAVMDVCQELDREVESSTNR
PNIIRSSMAASIESNKQINLEDSDEEEIVGPKEELKLRSYQLELAEPSLEGKNSVIVAPT
GSGKTHVALYIIKHHMENVKVSRHPKVIFLVEQSALAEQQGKQCMTYLPCKIKVITGESQ
RNERIKTLNEWIARRDCLVVTAQILLNALRDGTVRVTDFSLMVFDECHHANDNHSYNMIM
ERYLDIKLQNPEQARNLPMIVGMTASVGVGRASDDDKAKRHIEKVMANMDAETIVTVTEN
IMELRKFVNIPKQKLYKVPKREKDYFGTLLNKLMDATEKYMKQQKYLQLVRKPETVLKPP
LEKGSDQYTQWVSMLWRETAKVNDQVAGRFFDTCRKYLDLYNKALIIYKDARPADALTFI
ISTTKRWEQTVIPDETENKMKHMFDKTKSMLEKCTLDPKHKNPKLESLRQMIVDYFKENP
DSRVIVFAKTRELVKAIESFMKETEELRILNPIQFVGVQANKEMGGMTKNEQDEILQLFR
EGGHKVIVATSVAEEGLDIQKCSLVVRYDHVTNEIAMVQSRGRGRADDSKYVVLASEDSD
TIRKEELNQIREVMMNRAITSVRDELIRDREAVLRRVREIQHEAKVARDIALKNRKAAQA
KLGEFKITCNPCRNFICMSTDIKKIENAHHAAINEDIMENVKVVISIPDYEDVNISCGAG
KIFCKNCGNPLGNISIYKNAQFCILKCECLIMIDSAGNGITKKRWKQVPFIVPPLTSNDL
EKRIQGEKYLEC
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atggctggcagtttagatttgggcagtgccccttcactcgggcatgacagcctgctaaaa
tcagacgaatccaacagtctacgtatggacgcaggggctaaacttggaagctccttattc
aaagacggttcacgtccaaaaggtgtgtctcaagatggaacaaagtcaggtgaagattca
gctgggaaatcgcatccacagacaagtggtccaaagcaggtgcccccagttctacatcag
tccagagggggacagtctgtgaagggtggggacacttacaggagtgtggacgtccaggag
gaaatgttctcctccctgtcgccagaggatgacagtgtgccccagtacatacagctgtat
aggcccatgattgtaaaatgtgtggactgtgctcccctcttaccaagcctcagggacata
attagtgatcaaggagaaagaatcagaattaagaatgcctctaaaaatgaaggaacacag
gcaggaatggaattgttcttgaatattttagaaaagaaagttgaccatcctgatcgttgg
taccggtttgttcatgctttaaaagatgcagattttgagtatgttgccaaggttttggaa
agacaggagaaaatagacacacgagttttcacgatgcagatacgtcttattgacattttt
gctgatgttttgtacaaaaagcttaagcctagtgaaatcattgttgatttgtattccgaa
agagttgtgaacaaagatatttttgatgcagtgaaacgcgatgaggaactaaatggagaa
tcttcagccactattgtacttattgataacatatttcgttgtcatagaaattggtaccct
atttttctcgaggttctctgcagacataaatacatggacatagtgaaggagatcgatgat
tcgtttttagagaagagacagatgaagaaggtgggaggagaaaaccaggagaatagttca
gattccatggaaactgtggaaaaggctgtaggagccccctcaaaatcccgccagttggag
agggagttttctgataattcggtttcccccagcaaacaagagcaagagaagaacacttct
attcaggaaaactatctctcagaaacttttgaaagtccgcaaggcgtgaacaatttgagt
gggaactcaatgcaggagagtattgatgttgaattcaaccagttgaacaaggacttagac
agttctctacgcctaggagacggtgaggagacaggcaggaagcgagtggacgacgacgcc
ggggacaacagaggttcagccccgatcagaggcaacataagcctaagctctaccacggat
aacaggagttttccagtgccaaataatgatttgacaaattttagcctggggatggactcg
atggcagtgatggatgtgtgccaagaattagacagggaagtggaatcctccactaatcga
ccgaacatcatcagaagtagtatggctgccagtatagaatccaacaaacagataaacctg
gaggattctgatgaggaagaaattgtaggccctaaagaggaactgaagctgagaagttat
caactggagcttgctgagccttcactggagggaaagaattctgtcattgtagccccaacc
ggaagtggcaaaactcatgtggcactttacatcattaagcaccatatggagaatgtcaag
gtttcaagacatcccaaggtgatatttctggtggagcaaagtgccctggctgaacagcaa
gggaagcaatgcatgacataccttccttgtaagatcaaggtcatcacaggagaatcacaa
aggaacgagcgaatcaaaaccttgaatgagtggattgccaggcgtgattgcctggtggtg
actgcccagattttgctcaatgccctcagagatggcacagtccgcgtgacggacttctca
ctgatggtattcgatgagtgtcaccatgccaacgacaaccactcgtacaacatgatcatg
gagcgttaccttgacatcaagctacagaatccagaacaggccagaaaccttcccatgatt
gtgggaatgactgcctcggtaggtgtagggagggcctcggatgacgacaaggccaaaagg
cacatcgagaaagtcatggccaacatggatgctgaaactattgtcaccgtcactgaaaac
atcatggaactgaggaaatttgtcaacatacctaagcaaaaactgtacaaggtacctaaa
agagaaaaggactactttgggactcttttgaataaattgatggatgccacagaaaagtac
atgaagcaacaaaaatatcttcagctggtgaggaagcctgagacagtgctgaagcccccc
ctggagaagggcagtgaccagtacactcagtgggtcagcatgctgtggagggagacggcc
aaggtcaacgaccaggtggccgggcgattctttgacacctgtcgcaagtacctggatctt
tacaacaaggccctaatcatctacaaagatgcccgtccggccgacgccctgacctttatc
atcagtaccaccaagaggtgggaacagacagtcattcctgatgagacagagaacaaaatg
aagcacatgtttgataagacaaaatccatgttggaaaaatgcactttagatccaaagcat
aaaaatccaaaactggaatccctaagacagatgattgtggattactttaaagagaatcct
gattcaagggtcattgtttttgccaagactagagaactggtaaaagctattgagagtttt
atgaaagaaacagaagaactgcgaatcttaaacccaatccagtttgtcggggtgcaggcc
aacaaagagatgggaggtatgaccaagaatgaacaggatgaaattctgcagttgttccgg
gaggggggtcacaaggtgattgtagccacgtcagtggccgaggaggggctggatatccag
aaatgtagcctggtagtgcgctacgatcatgtgaccaatgaaatcgccatggtgcaatcc
agaggtagaggaagggcggatgacagcaaatatgtagttttagcctcggaagacagcgat
acaatcagaaaagaggagctgaatcagatccgggaagtcatgatgaaccgagccataacc
agtgtcagagatgagctcattcgagacagggaggcggttcttaggcgcgtgagggagatc
cagcatgaggccaaggtcgcaagagacatagccctcaaaaacaggaaagctgcccaggcc
aagctgggcgaattcaagatcacctgtaacccttgcaggaatttcatctgtatgtccaca
gacataaagaagatagagaatgctcatcatgcagccattaatgaggacatcatggaaaat
gtcaaagtcgttatctcgataccagactatgaggacgtcaacattagctgcggggctgga
aaaatattctgcaaaaattgtgggaatccgttgggaaatatcagtatctacaagaacgcc
cagttctgtatactgaagtgtgagtgtttgatcatgattgatagtgctgggaatggaatc
accaagaagcggtggaaacaagttccttttattgtcccgcctttgacctccaatgacctt
gagaagagaattcaaggagaaaagtaccttgaatgctaa
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