Crassostrea virginica (eastern oyster): 111101096
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Entry
111101096 CDS
T09197
Name
(RefSeq) protein PAT1 homolog 1-like isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111101096
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111101096
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111101096
mRNA degradation factors
5'-3' decay
Decapping complex
111101096
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
DUF7527
Motif
Other DBs
NCBI-GeneID:
111101096
NCBI-ProteinID:
XP_022289101
UniProt:
A0A8B8AC94
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Position
6
Genome browser
AA seq
905 aa
AA seq
DB search
MEDTFAGINSYNSALGAGVGNMNDLMEAPEEEEDIDLMNDETFGGDIDDGFDWEEEHEKL
SEVIEVGDKVLYGRPSRDQDYQNNYVSQEEYMEQSIQRLVVEDEEIDDPAIVNVSKNRPI
PKNHKNLEDLFGPASPPALLDTEHLVSPSSRNIWGSPVKEAYMPPAVNNLQTLFEFAKAA
SGPSHGKGVSGRTLEELENQILPGTKGHAMTAEDLERQLRGEGSKPPPLPEPHLQHPPPG
FLPGSPGPRNQTPQRMPPGYGPYMPVMDGRRSPMGQVPYPPRGGEGPPGPPPPGPIPPHL
LNGRRSPLNSVSTTPQNHRSSPVLLHRLSPLAAGIGHASPSPGRVSPVTIIMRGSPSPSP
PPTTPQVALLSAYARGALQSLMGNRMPTSPIGIPRPAMMRGPPPHSPYNSPGPRQSPHGG
HYGPPPGSPYGPPPPGSYPPPHSSPGGPRPPHPMGHSDPRRGRGRGHFRGHPRGNYGHMD
NREGYSEGHDPNKFDQGYYQNNRDHRRDYQDNRREYDRRRYYHYNPDEDRKRSVDAYAGL
MTQKEKDWIIKIQLIQLQTENPYLDDFYYTTYTLKKKAEERQKRQQNGLMEDKDGELNLI
IPAMAKLETRPYKPAQFEGSLGRLTTSSVHNPRQIIDVRSDAKPHGEESESKNVSKELRR
SRQLLMEIENGYNLLLDVDDIEKKILALPEEARKPLFEDRKNMLTDLYKYLLCPGNNDHF
LSIMSIRKGRKLVARVLPLLEKSQSENLVQLLLRNMAYLIKKDQGVEGLMCLHDSVIRVI
DSCDLQHLVDFATELKESRQNQSKTTAVAIQNKFGSSVVCSLLHRGEVLHANMSPLDMDN
QLESLWCQFVHEFAGILAVVPTESLVHPKQHHASITEHFDRLLNKKLIAVIEDKVKLFTE
PERAA
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atggaagacacgtttgctggtataaactcatacaactctgccctaggggcaggggttggt
aacatgaatgatttaatggaagcgccagaggaggaagaagatatagatctcatgaatgat
gaaacctttggaggggatattgatgatggttttgactgggaagaggagcatgagaagtta
tcagaggtcatcgaggtcggtgataaagtcctatacggccgaccgtctcgggatcaagac
taccagaacaactacgtcagtcaggaggaatacatggagcagagtattcagcgactagtt
gtagaggatgaagaaattgatgacccagccattgttaacgtcagcaaaaaccgacccatt
cctaaaaatcataaaaacctggaggatttgtttggtccagcctctccacctgctctactg
gacactgaacacctggtctccccatctagcaggaatatctgggggtccccggtgaaggag
gcctatatgccccccgcagtcaacaatctccagactttgtttgagttcgctaaagcagct
tcaggtccctctcatggcaaaggtgtttctggaagaacgttggaagagctagaaaaccag
atactgccagggacgaagggacatgccatgaccgcagaggacctggaacgtcagctgagg
ggggagggatccaaacccccgcccctcccagagcctcacttacagcacccacccccagga
tttctacctggatcacctggccccagaaaccaaacaccacagcgcatgccccctggatat
ggcccctacatgccagtgatggacggccggcggtcaccgatggggcaggtgccctacccc
ccacgaggaggggagggccccccaggaccaccaccaccaggccccatcccaccacaccta
ctcaatggtaggagatccccactcaattctgtctccaccacccctcagaatcatagatcc
tcacctgtcttgttgcataggctttctcccttggctgcaggcattggtcatgcttcaccg
tcccctgggcgggtatccccggtgacaatcattatgagagggtcgccctcgccctcaccc
ccacccaccacaccccaagtcgccctcttgtcggcctatgcccgaggggccttacagagt
ctcatggggaaccgtatgcctacttcacccataggaattccccgccccgccatgatgaga
gggccccctccccacagcccctacaacagcccggggcccagacagagcccacatggaggg
cattacggcccccctcccggcagtccgtacggaccaccccctcccgggtcctacccaccc
cctcatagcagccctggcggaccgagaccacctcatccaatgggccattctgatcccagg
agagggcgggggcgaggtcacttcagaggccatcctcgaggaaattatggtcacatggac
aacagggaaggttactcagaaggtcacgacccaaacaagtttgatcaaggttattaccag
aacaaccgcgaccatcgccgtgattaccaagacaaccgacgagagtacgaccgacggaga
tactaccactacaatccggacgaggaccgaaagcgctcagtggatgcctatgcagggctt
atgacccagaaagaaaaagactggatcatcaaaatccagctcatccaactccagacagag
aatccgtatctagatgacttctactacacgacctacacgttgaagaagaaggccgaggag
cgacagaagaggcagcagaatggattgatggaggacaaagacggagagctgaacctgatc
atccctgccatggctaaattggagacccgcccctacaaaccagctcagtttgagggctcc
ttgggcagactaaccacctcaagtgttcacaatccccgacaaattatcgatgtcaggagt
gatgccaaaccccacggtgaggagagcgagtccaaaaacgtctccaaagagctgaggcga
agcaggcagctactgatggaaatagaaaatggatataatcttctactagatgttgatgac
attgaaaagaaaattttagctttgccagaagaagcaaggaagccattatttgaggacagg
aagaacatgttgacggatttgtacaaatatctgctgtgtccggggaataacgaccacttc
ctgtccatcatgtccatccgcaaagggaggaaactggtggcgcgcgtcttacccctactg
gaaaaaagtcagtcagaaaacctggtacaactgctgctgagaaatatggcctatctgatc
aaaaaagaccaaggcgtggagggactgatgtgtctgcatgactcggtgatccgtgtgatt
gacagctgtgatctccaacaccttgtggatttcgccaccgaactgaaggaatccagacaa
aatcagtccaagacaaccgctgtcgcaatacaaaacaagtttgggagctcggtggtgtgc
agtctgctccacagaggggaagtcctccacgccaacatgtcccccctagacatggataac
cagctggaatcactatggtgtcagtttgtccacgagtttgccggcatcctggcggtggtc
ccgacagaatccctggtccaccccaaacagcaccacgcctccatcaccgaacacttcgac
cgactgctcaacaagaaactcatcgcagtcatcgaagacaaagtcaagctattcactgaa
ccagaacgggcagcatga
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