Crassostrea virginica (eastern oyster): 111101129
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Entry
111101129 CDS
T09197
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111101129
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111101129
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111101129
mRNA degradation factors
5'-3' decay
Lsm complex
111101129
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SHNi-TPR
SPT2_N
Motif
Other DBs
NCBI-GeneID:
111101129
NCBI-ProteinID:
XP_022289157
UniProt:
A0A8B8ACE9
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All DBs
Position
6:complement(36009990..36014983)
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AA seq
133 aa
AA seq
DB search
MNYLPGTASLVEEIDKKLLVVLRDGRTLIGYLRSIDQFANLVLHRTIERIHVGKKYGDIP
RGIFVVRGENVVLLGEIDLENENNPQLEEVPIDDILEMQREEQIQKQQEEERKKRSMLER
GLQPHSELHDDLF
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atgaattaccttccagggacagctagtttggtagaagaaatagataagaaactcctggtt
gtgctaagagatggaagaacattgataggatatcttcgtagtattgatcagtttgcaaat
cttgttcttcatagaacaattgaaagaattcatgttggtaagaagtatggagatatacca
agaggaatatttgttgtaagaggagaaaatgtggtgctgcttggtgaaatagacttagaa
aatgagaacaaccctcagctggaagaggtgcctattgatgatatcctggagatgcagcgt
gaggaacagatccagaaacaacaggaggaggagcgcaaaaagaggtccatgctggagcgc
ggtctgcagcctcactcagaactccatgacgacctgttctaa
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