KEGG   Crassostrea virginica (eastern oyster): 111101512
Entry
111101512         CDS       T09197                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like
  KO
K12857  Prp8 binding protein
Organism
cvn  Crassostrea virginica (eastern oyster)
Pathway
cvn03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cvn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111101512
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cvn03041]
    111101512
Spliceosome [BR:cvn03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    111101512
 Complex C
   U5 SnRNP specific factors
    111101512
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 EIF3I WDR55 Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd Beta-prop_EIPR1 Beta-prop_IFT122_1st Beta-prop_TEP1_C WD40_MABP1-WDR62_1st NBCH_WD40 ANAPC4_WD40 Beta-prop_SPT8 Beta-prop_DCAF4 WDR90_beta-prop_4th Beta-prop_SCAP WD40_RFWD3 Beta-prop_RIG_2nd Ge1_WD40 eIF2A Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_Vps41 Beta-prop_NWD2_C Beta-prop_WDR35_TULP_N WD_LRWD1 Beta-prop_IP5PC_F Nbas_N Beta-prop_VPS8 MIOS_WD40
Other DBs
NCBI-GeneID: 111101512
NCBI-ProteinID: XP_022289747
UniProt: A0A8B8AE38
LinkDB
Position
1:9438510..9444212
AA seq 346 aa
MEFKRKATDTAVVPVKKPRNEITAYGSGQNGALIESGPPRLSNLEAPIMQLSGHEGEIYT
AKFSPDGQMIASSGFDRLILFWTVYGECENFAVLKGHTGAVMELQFSTDGNLLVTAATDK
TVALWDVEVGERIKKLKGHTTFVNSCQIARRGPQLICSGSDDGTIKLWDARKKGCQQTFQ
NTYQVTAVSFNDTAEQVISGGIDNDIKVWDLRKNDMLYRLRGHTDTVTGMQLSPDGSYLL
SNSMDNTVRIWDVRPFAPQERCVKVFQGHQHTFEKNLLRCAWSADGSKITAGSGDRYLYI
WDTTSRRILYKLPGHAGSVNDVAFHPTEPIVMSCSSDKKIYLGEIE
NT seq 1041 nt   +upstreamnt  +downstreamnt
atggaatttaagaggaaagcaacagacactgccgtggtcccagtaaagaagccacgaaat
gaaattacagcgtatggttctgggcaaaatggagccttaattgaatcgggcccaccaagg
ctctccaacctggaggcgccaatcatgcagcttagtggacatgagggggaaatttacaca
gccaagttctctcctgatggacagatgatagcttcatcaggattcgacagattaattttg
ttttggactgtttatggggagtgtgaaaactttgctgttttgaaaggacacacaggagca
gtaatggaacttcagttctccacagatggaaacttacttgtcacagctgccacagacaaa
actgttgcattatgggatgttgaagttggggagagaattaagaagttaaaaggtcacaca
acatttgtaaattcttgtcagattgccagacgaggacctcagctaatttgtagtggaagt
gatgatggtacaatcaagctttgggatgcaaggaaaaaaggttgccagcagacatttcag
aacacataccaagttactgcagtttccttcaatgatacagctgaacaagtcatatcaggg
ggaattgataatgacattaaggtctgggatctgaggaagaacgatatgttataccggtta
cgggggcacacagacacagtaacagggatgcagttaagtcctgacggatcctatctcctg
tctaattcaatggacaacacagtaagaatctgggatgtacgaccatttgctccccaagag
agatgtgttaaagttttccaaggacatcaacatacttttgaaaagaatctgttgcggtgt
gcctggtccgcagatggaagcaagataacagcaggttcaggtgatcgttacctgtatatc
tgggacacaacctctcggcgaatactgtacaagttaccagggcatgctggatctgtgaac
gatgtagctttccatcctacagaacctatagtaatgtcatgctccagtgacaaaaagatt
taccttggggaaattgaatga

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