Crassostrea virginica (eastern oyster): 111101883
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Entry
111101883 CDS
T09197
Name
(RefSeq) CCR4-NOT transcription complex subunit 2-like isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111101883
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111101883
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111101883
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111101883
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
RE_LlaJI
Motif
Other DBs
NCBI-GeneID:
111101883
NCBI-ProteinID:
XP_022290237
UniProt:
A0A8B8AU70
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Position
6:29774390..29792351
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AA seq
580 aa
AA seq
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MIPDEQAMAFRNPLENTNMSSGIGQRFMTDQLSWNTQYGLGRKGTGELSPGSRKILGQQM
PPGQPNLAKQNILNLNLDDDGELDLGQGAMSNSSKVFRPDRDMMSQSPSQLGFGMSNFYT
QGGGSGLGANSGLGSNSGLGSNSGLGTNASMAGTFAALPQRGAVSGPQFRGNNSTPTSMN
LPYNLQQPQQQPSPSRNMISAIGGQRNVISQSQTSQSMSKLQNSGPMSSINNNFVFGQAN
RQSKFSVYNNPEQKFMNMLFGTDADQPGLDLSEFPTLGNRNLPSTPISNVRNYGQYLKVG
MVSKPVAETAPEFQIQQEDFPALPGAQSKGGRDPPSSISNDAARKTPTSASMTSTEQILK
DGKLSGDKANQAKRGIQTHADGMVSNIPSGMVTDQFGIAGLLTFLRAANENDHNLIALAP
GIDLTTLGLNLNSPENLYSTFQSPWVDLPCRPQDIDYHVPTEYLTNIFLRDKLAPIKLNR
YGEDVLFFLFYMNGNDFIQLAAAAELYTRDWRYHKEERVWITRAPGVEPTFKSAMYERGM
YYFFDVQNWRRVAKEFHLEYDKLEERPTLPNVMHHNASQQ
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgataccagacgagcaagcaatggcttttcgtaatcccctggaaaataccaacatgtcc
tcaggaataggacaaaggtttatgactgaccaattatcatggaacacccaatacggcttg
ggccggaaggggacgggggagctttccccggggtccagaaagattctgggtcaacaaatg
cctcccgggcaacccaatttggccaagcagaatattctgaacttgaacttggacgacgat
ggagaactagatctggggcagggtgccatgtcaaattccagcaaagtgttccgaccagat
agagatatgatgtcacaatctccctcccagctaggctttgggatgtccaacttttataca
caaggtggaggctcaggtctgggtgccaattcgggtctgggttcgaattcaggtctgggt
tccaattcgggtctgggtacaaatgccagtatggcgggaacgttcgcagccctacctcag
agaggggcagtgtctgggccccagttcaggggaaacaactccacaccgaccagtatgaac
ctaccgtataatctacagcaaccccagcagcagccctcacccagcagaaatatgatatct
gcgattggaggacagagaaatgtgatatcccagagtcagacgagtcagtccatgtccaaa
ttacaaaacagtggtccaatgtccagtattaacaacaactttgtatttggacaagccaac
cgccagagcaagttctccgtctacaacaatccagaacaaaagtttatgaatatgttattc
ggtacagatgctgaccagcccggtttagacttgtcggagttccctaccctgggaaacagg
aaccttccctccacgccaatctccaacgtcaggaactatggtcagtatctaaaagtgggt
atggtcagtaagcctgtggcagagacagcccccgagttccagatccaacaggaggatttc
cccgcactccctggggctcagagtaagggagggagggatccaccttcaagtatatcaaac
gatgcagcaaggaaaacaccaacaagtgcatcaatgacgtcaacggaacaaattttgaaa
gatgggaaactttcaggggacaaagctaaccaagcgaagagaggcattcagacacatgct
gatggaatggtatccaatattccctccgggatggtgacagaccagtttggaatcgcggga
cttcttacctttctccgagcagccaatgaaaacgaccacaatctcatcgctttggcccca
ggaatagatctcacaacgttaggattaaatctcaattctccagaaaatttgtacagtact
tttcaatcaccctgggttgatttaccatgtcgacctcaagacatagattaccacgtccca
acagagtacctaactaacatcttcctcagagacaagttggcgccaatcaaactgaatcga
tacggtgaggacgtcctgttctttctcttctacatgaacggcaatgacttcattcagtta
gcggcagcagcagaactgtacacacgagattggaggtatcacaaggaagaacgggtgtgg
atcacgcgcgccccaggggtggagcccacattcaagtcagccatgtatgagagagggatg
tactatttctttgatgtacagaactggagaagggtggcaaaagaattccatttggagtat
gataaactggaggagcggccaaccttacctaatgtgatgcaccataacgccagccagcag
tag
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