Crassostrea virginica (eastern oyster): 111103227
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Entry
111103227 CDS
T09197
Name
(RefSeq) cartilage intermediate layer protein 1-like
KO
K24436
cartilage intermediate layer protein
Organism
cvn
Crassostrea virginica (eastern oyster)
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
cvn04990
]
111103227
Domain-containing proteins not elsewhere classified [BR:
cvn04990
]
Thrombospondin domain-containing proteins
Other thrombospondin domain-containing proteins
111103227
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CILP_5th
CILP_C
Ig_3
TSP_1
Ig_2
TSP1_spondin
ShK
I-set
CILP
V-set
ig
CarboxypepD_reg
TSP1_CFP_C
DUF1249
Motif
Other DBs
NCBI-GeneID:
111103227
NCBI-ProteinID:
XP_022292022
UniProt:
A0A8B8AKE9
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All DBs
Position
7:complement(51631404..51646845)
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AA seq
1188 aa
AA seq
DB search
MRSLILVYSVLFFQTSQSYGKDFIESCRDQSSSCAEMPNLCSSGEYSDWAKTYCPKFCGF
CDDLIEGKTSTTTAENVDDCVDKIRNCFWYDNDLCFGANEMWARKNCPKRCGFCGNFENL
CVDEISYCDKLSPSICTDKSYQSWSRMNCRKFCNLCADPSISKTTTTTAIPIIPDPLTVN
EPRNGQWSYWDSWSACTVSCGGGVRSRNRSCTEPPPQNGGDDCVGDSIQSAICNTFMCPD
CNRACPFRGTLSGDCSVCHCTNTIAFGTVKDENNMPLGDVGVYIQSRQWEPLTTTNAYGQ
YVTQGVCLMGESLVFKKEHFIESSGLPKMRNFTHWICDSTLNQTVPPTFYTNPKDKVRMV
GQGVVFCCKAEGKPVPVKYTWIKDGKEISGGVNGELHMGNLQLSHSGLYSCRVETPAGIS
TSKEARLSVKPQGKDTCDGKPEDDFIDLPDGCYTEEMGKKLTRLNIGRCHKGQCITSILS
NAVDCYDAWPKYCCTVNETKPLTINCSSFSYVISKTATCKCRECSTITQISGEVYGMQNG
SQIPLKSGEIYIKGQLAGETNDNGFFSLTVSSDDKEIVLVVKNDVEQKFMDTMKSIRISE
DSNTPIKIVAPLKPKPVLFNSNLGHTLSLSGNNRDAFSHLSFPSDSFVTEDGQPFNGIVR
ALVHFIDPRNMDDIESAYGSVSTIGEDGTELPLETYGMTNYVFNDEMGNTLKLNSPVKYS
IDASKLNISLDDDGNSDIYSWYLDMKTGKWVKSNRFQLKAQQSGKRRLLSTPTLEVDLPP
QQDIKIKETYTKLTSQKTVVAYTYYYTYYYRYHNGDRVGRRVETRTAYTTNVRYVQTRAE
KNILNACVVAVKVYQDTSFQLPLRTPVTVTAITYNPLNKKFSGKDTQVTNENGIACLTIF
CYQNVTLYAQQSQTPVDLITSNTHSLPESYARTNINKNTRVMFEAIESSYDTLAEKYSPV
RFYNERSQCLHPIRDDYHFQFAPLVRPELFSPRIGEETLDNILSWYPDAKDKPERRSCFV
KVRVTASTNFPVGLRLIANSYQGFQSAEPDVSKLYGTVETGAIPDLSVTPVNFKERAACI
EFRCGGVAFDDKTLVRNLTTHIFIIPTDKTCQFVPRPENMDIYDLSSDLTKGVAFRATAN
RNYGPLYGIYIANGPKETARNMCYSGSTRVGNVMKTDESGTLGTFVCS
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgagaagtctcattcttgtatacagtgttctgtttttccaaacaagccaaagttatgga
aaagattttatcgagagttgcagagaccagtcgtcatcctgtgctgaaatgcccaatttg
tgttcctcaggagagtattctgactgggccaaaacttactgtcctaagttttgtggattc
tgtgatgatctgattgagggaaagacctctacaactacagctgaaaatgtggatgactgt
gttgacaagatacgtaattgtttctggtatgacaatgacctatgctttggtgcaaatgaa
atgtgggctcgcaaaaattgcccaaaacggtgcggattttgtggaaattttgagaacctc
tgcgtggacgagatcagctattgtgacaaactaagccccagtatttgcaccgacaaaagt
tatcaaagttggtcaaggatgaactgcagaaaattttgtaatctatgtgcagatccttcc
atttctaaaacaactacgacaacagcgatacccattatcccagatccactaactgtaaac
gaacctcgcaatgggcagtggtcttactgggattcttggtcggcctgtaccgttagttgt
gggggaggggtgcgatcacggaataggagttgtacagaacctccaccacagaatggaggt
gacgattgtgtaggggacagtatacagagcgcaatttgtaacaccttcatgtgtccagat
tgtaaccgtgcttgtccattcagaggaaccttgtctggcgattgtagtgtatgtcattgc
accaataccattgcatttgggacagttaaagacgaaaacaacatgccattaggcgatgtc
ggggtttacatacagagtcgccaatgggaaccactaacaacaacaaatgcttacggacaa
tatgtcacgcagggagtctgccttatgggggaaagccttgtattcaagaaggaacatttc
atcgagtcctcggggcttccaaaaatgagaaattttactcactggatttgtgattcgacc
cttaatcaaacagtgcctccaaccttttacacaaatcctaaagataaagtacgaatggtc
ggtcaaggggttgttttctgctgcaaagcggagggtaaaccagtaccagtaaagtataca
tggattaaagatggcaaagaaataagcggaggtgttaacggcgaattacacatggggaat
ctgcagctatcacactctggtctttactcctgcagagtagagacaccagctggaatatcg
acatcaaaggaagctaggttatctgttaaaccacaaggaaaagacacttgcgatggtaaa
cccgaagacgactttatagacttgccagatggatgttatacagaagaaatggggaaaaaa
cttactcgtttaaacattggtcgatgtcataaaggacaatgtattacttccatcttgtca
aatgctgtggattgctatgacgcatggccaaaatattgttgtacagttaatgaaaccaaa
ccattgacgataaattgtagtagtttttcttatgttatatccaaaacggcaacgtgtaaa
tgtcgcgagtgttcaactattactcagatatccggtgaagtatatggaatgcagaatgga
tcacaaattccgttgaaatctggcgaaatttacattaaaggtcagttggctggagaaacg
aatgacaatgggttctttagtctcactgtatcaagtgacgacaaagaaattgttcttgta
gtgaagaatgacgttgagcaaaaattcatggataccatgaaatcgataagaataagcgaa
gacagtaatacacccataaaaattgtcgctccattgaaacctaagccagtattgttcaat
tctaatcttgggcatacgctgtctctttctggtaacaatcgtgatgctttcagtcatctt
tcgtttcccagcgattcctttgtaaccgaagatggacaaccatttaatggaattgtacgt
gcgttagttcattttatagacccacgaaacatggacgatatagagtctgcctacggaagt
gttagtacaataggagaagatgggactgagttaccactcgagacctatgggatgacaaat
tacgttttcaatgatgaaatgggtaacacattgaaattaaactcgccggtgaaatacagt
attgatgcgagtaagttaaatatcagccttgatgacgatgggaactcggatatctattca
tggtatttagatatgaaaaccggcaaatgggtgaaatcaaaccgttttcaactaaaagcg
caacaaagtgggaaaagacgtttgttatctacaccaacacttgaggttgatctgccacca
cagcaagatattaaaatcaaagaaacatacactaaattaacaagtcaaaagacggttgtt
gcgtacacctactactatacttactattatcgataccataatggagatagggtaggacgt
cgagtagaaacaagaacagcttacactacaaacgtaagatatgtacaaaccagggctgaa
aaaaacatactcaatgcgtgcgttgttgctgtaaaagtatatcaagatacatcgttccag
ttgcccttaagaaccccagtaacagttactgctataacttacaatccattgaataaaaaa
ttttctggaaaagatacacaagtgacgaatgaaaatggaatcgcttgtcttaccattttt
tgttaccaaaatgtcaccttgtatgcacagcaatcccagacaccggtggatttaataacc
tcaaacacacattctcttccagaaagctacgccaggacaaatatcaacaaaaacacgagg
gttatgtttgaagcaatagaaagttcttatgatacacttgctgaaaaatatagtccagtt
cgtttttataatgaaaggtcacagtgcttacatccaataagggatgactatcattttcag
tttgcgcctttagtgaggccagaattattttcacctagaattggagaggaaacactcgat
aatattttgtcctggtatccagatgcgaaagataaaccagagagaaggtcttgctttgta
aaagtcagagtaacggcatctacgaatttcccagtcggattgaggttaattgcaaatagt
tatcagggttttcaatcggctgaacctgatgtatccaaattatatgggacggttgaaact
ggagcaatcccggatttatcggttacacctgtaaatttcaaagagagggctgcgtgtata
gaatttagatgcggaggtgttgcttttgatgataaaacacttgtacggaatttaacaaca
catattttcataattccgacagacaaaacatgtcagtttgtaccgcgaccagaaaatatg
gacatttacgacctgtcttctgatctcacgaagggcgtagcttttcgtgccacggctaac
agaaactatggtcctctatacggaatatacattgcgaatggtcccaaggaaacagcgaga
aatatgtgctactccggaagtacacgagtaggtaatgtcatgaaaacggatgaatcagga
accctgggaacctttgtgtgttcctaa
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