Crassostrea virginica (eastern oyster): 111103246
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Entry
111103246 CDS
T09197
Name
(RefSeq) syntaxin-binding protein 5-like isoform X1
KO
K08518
syntaxin-binding protein 5
Organism
cvn
Crassostrea virginica (eastern oyster)
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cvn04131
]
111103246
Membrane trafficking [BR:
cvn04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
111103246
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
111103246
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LLGL
Beta-prop_EML_2
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR3_1st
WDR55
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR3_2nd
Beta-prop_HPS5
WD40_Prp19
Beta-prop_WDR19_1st
Beta-prop_NUP159_NUP214
Lgl_C
Beta-prop_WDR5
Beta-prop_VPS8
Synaptobrevin
Beta-prop_TEP1_2nd
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
111103246
NCBI-ProteinID:
XP_022292078
UniProt:
A0A8B8AN62
LinkDB
All DBs
Position
7:complement(23802185..23867921)
Genome browser
AA seq
1419 aa
AA seq
DB search
MSKMKKTLNRVLTKFEQLKAPPNADCGVEETLRTDHFQVSKTVRYGFPYEPTSVAFDPVQ
HLLAVGTKSGSLRILGRPGVDINCSHGPDVAVIQILFLINEGALVTVCSDDSIHLWNFRQ
KRPEIVHTLKFQRERITYCHLPFQSKWLYVGTERGNVHIANIETFTLSGYVINWNKAIEL
SRKTHPGPVISLTDCPVDPNKLLIGFETGTIVLWDLKSKTAECRFNLPEALRSVSWHHEG
KQFMCSHTDGSLTTYNIKQPQKPVSVMMPHAQMGKDGKLNPCKPITKVEWKSVKNGEPLV
IFSGGMSYDRAGRTPSITVMNGKSTTALEMEHNIVDFVVLCETPWQNDFQEPYAIVVLLQ
YDLVVVDLTSPNYPCFENPYPMDIHESPVTACQYYANCPPDLIPAFYSVGSSRQKRTGFS
EKSWPINGGVWGTSTCSYPEIFITGHADGSIKFWDASSVTLQVLYKLKTAKIFEKPKKRE
DSRNENRDSVGGDNQKNGGDSLDPDPLAVYLIHLCTESRILCFAGATHLVLCKFSKQELN
VEVQSLEFSIIYHDILDDMESPDIDNHYRPCLGVVGQIQSGSRESYSSNASDHSSKNEMW
TAVKVRSGSRKYSAGYVPDLVCVLQWLDSKEAGEGKEHPGNITFISMNSSYGLLAFGNES
GLAIVDYVQKTCLLNLGTPDLYGSMDPYNRGPRSPRNKRFFPTDGSGTEDGARSPTNDQS
SPPSSPNLIVKPRKKHSHEKLVPMQAIHERLSQEIDDSVIAHEKNNNVTEGVVVGVPAED
LDNIVNNLKDDYYEDDMKSQLQKLSQGSPEIHLERAVSVPSPNSDREEGISKALSEGAIS
KKAKKIVASKTVSDPSHHNSLQVDPESHGKSRPRSSSHPHVDVSDLKIVEQSPEHNTRHK
HRRVSLTSLTFKKNKNKSKHKDKHPSDSSDGPEQSGKSDDECRSPPLAHGHAHDGHSDEH
SDSDMDERPPPKSFLRRMSVKMKNIMLGNEKEEKKFKVDILDLTNDQGKFCCERVTVDEL
QNAILPVFLKPENCDRNDTSSFSRSRSSSMSSLDNVSKEAIQSLVFSDSYTGKTDNFTCP
CLWVGTSLGSVIVIVLNLPPPGQQRLDQPVIVSPSGTMFRLKGAILTMSFLDCNGVLIPS
VSEQWRDRENKEKEKQAHRQNTVNQKPKISPTSSTEYNGDKQFVVICSEKQARVISLPSQ
QCPYKTRITESSFVVRADVVTLRDSVCLACYIANGRIMAFSLPSLKPLLDIDFLPLNDVR
IARTFCFSSNGHASYLCSATEIQKITFSADMSDNLNEMLGELFKPCETPEPPKQGFFKNW
FSAGHSQLDREELFGESSGKGPRGLATKLQGKGSMQYVQNQASSGTSEVARAHKNFIERG
EKLGELGERSEMMREHAENFASDSRALMLKYKNKKWYQW
NT seq
4260 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagatgaagaagacattgaatagggtgcttacaaaatttgagcaactgaaagca
cccccgaatgcagattgcggggtggaagagacactgcgcacagaccattttcaagtgtcc
aagacggtcagatatggctttccctacgaaccaacatcagtagcattcgaccctgtccag
catctcttagcagtgggcacaaaatcagggtcgttacgaatattagggaggccgggagtg
gacatcaattgcagccatggacctgatgttgcagtcatccagatcctctttctcatcaat
gagggcgcccttgttaccgtgtgctcagatgacagtatacacttgtggaattttcgacag
aaaagaccagaaattgttcacacactcaaattccaaagagaaaggattacatattgtcac
ctgccgttccagagtaaatggctgtatgtaggaaccgagagaggaaatgtccacattgcc
aacatcgagaccttcaccctctctggctatgttattaactggaacaaggccattgaactt
tcaaggaagacccatccaggccctgtgattagcctgaccgactgtccagtggatcctaat
aagttgcttatagggttcgagacaggaaccatagtgttatgggatctgaaaagcaagacg
gcggagtgtcgattcaatctaccagaggctttgcgctcagtgtcctggcaccacgagggg
aagcaattcatgtgtagccacacggacggtagtctgaccacatacaacatcaaacagccg
cagaaaccggtcagcgtcatgatgccacacgctcaaatgggcaaagatggtaaactcaac
ccatgtaaaccaataaccaaggtggaatggaagtctgtgaaaaatggagagcctctggtc
attttctccggggggatgtcttatgaccgggcaggaaggacccccagtatcacagtcatg
aatggcaaaagcaccacagccctggaaatggagcataatattgtagactttgttgtgctg
tgtgaaacgccatggcagaatgacttccaggaaccgtacgctatagtggtcctcctacag
tatgacctggtggtggtagatttgacctccccgaactacccctgcttcgagaacccctac
cccatggacatccatgaatccccagtcacagcctgccagtattatgcaaactgtccacct
gatctcattcctgcgttctactcggtgggatcatctcgccagaaacgcacaggattcagc
gaaaagtcctggccaatcaatggaggagtatggggtacgtccacatgcagttatcctgag
attttcatcacaggacatgctgatgggtctataaaattttgggatgcttcttcagtgaca
ttgcaagtgttatacaaactaaaaactgccaaaatatttgagaaaccaaaaaagcgggag
gattctcgtaatgagaaccgggacagtgtagggggggacaatcaaaagaacgggggggat
tccctggaccccgaccccctcgccgtgtatttaatacatttgtgtactgagtccaggatt
ctgtgttttgcgggagctactcatttagtgctatgtaaattttccaaacaggaattaaat
gtggaagtgcagagtttagaattttccattatttatcatgacattttggatgacatggaa
tccccagacatcgataaccattatcgtccatgtttaggggtcgtaggtcaaattcagagt
ggaagtagggagtcatactccagcaatgcatctgaccacagctccaagaatgaaatgtgg
acggcggtgaaggtgcggtccggaagcagaaaatactcagccggctacgtcccagaccta
gtctgtgtgttacagtggctggacagcaaagaggccggggaggggaaggagcaccccggc
aacatcacctttatctccatgaactcatcgtatggactattggcttttggcaatgaatca
ggccttgcaattgtagattatgttcagaaaacttgcctgcttaacttgggaactccagat
ctctatggttccatggatccctacaaccgaggtccacgatccccccggaacaagcggttc
ttcccaacggacgggtcgggcacagaggatggggctcggtctccaaccaatgatcagtct
agccctccatcaagccccaatttaatcgtaaaaccgcggaaaaaacactcgcatgaaaag
ttagttccgatgcaagcgatacacgagagactatctcaagaaattgatgattctgtgata
gcacatgaaaaaaacaataatgtcacagagggggtggttgtgggtgtgccagctgaagac
ttggacaatattgtgaataatttgaaggacgattattatgaagatgatatgaaaagccag
ctgcagaaattgagtcagggttccccagaaatacacctggagagagcagtgtctgttccc
agtccaaactctgatcgagaggagggcatctctaaagcattatcggaaggagccatatcc
aaaaaggccaagaagattgtggcctctaaaactgtttctgatccctcgcatcataacagc
ctgcaggtggaccctgagagtcacggtaaatctagaccgaggtcgtcctctcaccctcat
gtagacgtgtcagatctcaagattgttgaacaaagccctgaacacaatactcgacacaag
caccggagagtgtccttgacctctctgaccttcaagaaaaataaaaacaaatctaaacac
aaagacaagcaccccagtgactctagtgatggaccggaacagtcggggaaatccgacgat
gaatgcaggtctccccccctagctcacggtcacgctcacgacggacacagcgacgagcat
tccgacagtgacatggacgagcgcccacctccaaaaagctttctacgcagaatgagtgtc
aaaatgaaaaacattatgttgggcaatgagaaagaagagaaaaagttcaaagttgatatc
ctagatttaacaaatgaccagggcaaattctgctgtgagagagtgactgtggacgaacta
caaaatgcaattttacccgttttcctaaaacctgagaactgtgatagaaatgacacatcc
tctttctcgcggtcccggagttccagtatgtccagtctggataacgtctccaaggaagcc
atccaatcactggtgttctccgattcctacaccggcaaaacagataactttacctgtccc
tgtctatgggtgggaaccagcttagggtctgtgatagtgatagttctgaatctacctcct
cccgggcaacagcggttggaccaacccgtcattgtgtctcctagtggtacaatgtttagg
ttaaaaggagcaatactcaccatgtctttccttgactgtaatggggtgctaatacctagt
gtgtctgaacaatggcgagaccgggagaacaaggagaaagagaaacaagcacacagacaa
aacacagtgaatcagaaacccaaaatctccccgacatcatcgacagaatacaatggcgac
aagcagtttgttgtgatatgctcagagaaacaagcaagagtaatatcactaccttcccag
cagtgtccgtacaagaccagaatcaccgagtcctcattcgtggtgcgggccgatgtggtc
accttgagggattcagtgtgtcttgcgtgctacatagccaatggccgcatcatggcgttt
agcctgccaagtctcaagcctctcctcgacattgatttcctccccctcaatgacgtgcgg
attgctcggacgttttgtttcagtagtaatggccacgctagctacctgtgttcggccaca
gaaatacaaaaaattacattttctgctgatatgagtgataacttgaacgagatgctggga
gaactcttcaaaccttgtgagacccccgagccacccaaacagggcttcttcaagaattgg
ttcagtgccggccattcccaactggaccgagaggagctttttggtgaatctagcgggaaa
ggtccccggggtttagctaccaagcttcagggcaaaggtagcatgcagtacgtacaaaac
caggcgtcaagtggcacctcagaagtggccagagcacataagaatttcattgaaagaggc
gaaaagttaggagaactgggagagcggtcagaaatgatgcgagaacatgctgaaaacttc
gcctccgattcccgggcattaatgctgaagtacaagaacaagaaatggtaccagtggtaa
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