Crassostrea virginica (eastern oyster): 111103422
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Entry
111103422 CDS
T09197
Name
(RefSeq) cleavage stimulation factor subunit 3-like
KO
K14408
cleavage stimulation factor subunit 3
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111103422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111103422
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
111103422
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Suf
FAD_binding_7
DNA_photolyase
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
NRDE-2
Motif
Other DBs
NCBI-GeneID:
111103422
NCBI-ProteinID:
XP_022292411
UniProt:
A0A8B8AMW4
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Position
7:complement(31547630..31583375)
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AA seq
1250 aa
AA seq
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MSTGSHAGGVLPPEQIGYIPDKLKKAEKRIEAFPYDTEAWSVLIRDAQMKPIEVARQVYE
RLVTQFPNAGKYWRIYIEQELKAKNFERVEKLFQRCLVKILSIDLWKLYLNYIKDTKGKL
PSYREKMAQAYDFALDKMGMDIMSYQIWVDYINFLKSVEAVGSYAENQQITAVRKVFQRG
VVNPMINIEGLWKDYCQYEQNINPLIAKKMTEDRGREYINARRVAKEYEAVTRGLNKNLP
SVPPQNNPDEAQQVDLWKKYIAWEKSNPLRTEDHALITKRVMFAYEQCLLCLGHHPDIWY
EAATYLEQSSKILTEKGDQNAGKMFADEAGSIYERAVTTLMKNNMLVYFAYADFEESRMK
YEKVHGIYKKLLVVQDIDPTLAFIQYMKFARRAEGIKSARQIFKMAREENRTRYQVFVAA
ALMEYYCSKEKTVALKIFELGLKKYGGIPEYLLCYMDFMSHLNEDNNTRVLYERVLSSGQ
VPPEKSIEIWSRFLAFESEVGDLASIQKVEKRRAQAIEKVQEFEDKDTALLIDRYKYLDL
YPCTTSELKAVGYFDLARQQVVTLPSASVTKVVLEDEESKNKPQYPKPDVEQMIAFKPRQ
IVPVGAHPVPGGEFPPPPAAANLISQLPPPDCFHGPFVIMDKFIEHFNQMVLPEAPVGTE
NGIDGSFKLDPGTQLSIDFALGRKRKVTEGEDSDEEGSEKHVVHWFRKGLRLHDNPSLRE
ALKGAATYRCVYILDPWFAGSSQVGINKWRFLLQCLEDLDTSLRKLNSRLFVLRGQPTDL
FPKIFKEWNITTLSFEEDPEPFGKERDSAIQMLAKEAGIEVIVRTSHTLYDLQKIISMNG
GSPPLTFKRFQSVLSKMEPPCEPEETITSSFLEKKKTPITEDHDDKYGVPTLEELGFDTE
GLGPAVFHGGEAEALTRLERHLERKAWVASFERPKMSQQSLFPSQNVLSPYLRFGCLSAR
LFYWKLRELYRKVKKRKIPPLSLHGQLLWREFFYTVATNNPNFDRMKDNPLCVQIPWDKN
PEALAKWAEGKTGFPWIDAIMIQLRQTGWIHNLARHSVACFLTRGDLWISWEEGMKVFEE
LLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVGFGKRADPTGDFIRTYLPVLKGYPAKY
IYEPWTAPESVQRAAKCIIGKDYPVPMVNHAEVSKLNTGRMKQVYQQLALYASIAAVPKQ
IHSEEPYSNSKAMHSGNHPSRVAMIENTDHGNHGQMSAEEGDNQHQFLAA
NT seq
3753 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacaggttcgcacgccggtggcgtgttgccaccggagcaaataggctatatccca
gacaaactaaagaaagcagaaaaacgcattgaagcattcccatatgatacagaggcatgg
agtgttttgattcgagatgcacagatgaaacccatcgaagttgcacgacaagtttacgag
agactggttacacaatttcccaatgctggcaaatattggaggatttatatagaacaagag
ttgaaagcgaagaattttgagagagtagaaaagctatttcaaagatgtctggtgaaaatc
ctcagcattgatctctggaaattatacctgaattacatcaaggacacaaagggaaaattg
ccttcatacagagaaaagatggcccaggcatatgattttgctctggacaaaatggggatg
gacatcatgtcttaccaaatctgggtcgactatataaacttcctcaaatcagtggaggca
gtgggctcttatgctgagaaccagcagattacagcggtgaggaaggtcttccagaggggt
gtggttaatcccatgattaacatcgaagggctgtggaaggactactgccagtacgaacag
aatataaatccactgatcgctaaaaagatgacggaggataggggtcgagaatacatcaat
gccaggagggtggccaaggagtatgaggccgtcacgaggggcctcaacaagaatcttccc
tcggtgccccctcagaataaccctgatgaagcccaacaggtggacttgtggaaaaaatac
atagcttgggagaaaagtaaccctttgagaactgaggaccatgcactgataacaaaacga
gtaatgttcgcctatgaacagtgtctgctgtgtctcggacatcacccagatatttggtac
gaggctgccacatacctagagcaatcaagcaaaattctaaccgagaaaggggaccagaat
gctgggaaaatgtttgctgatgaggcaggatctatctatgagcgagctgttactactctt
atgaaaaacaacatgctagtgtactttgcatatgcagattttgaggagagtagaatgaag
tacgagaaagtccatggtatatataaaaaattactggtagtacaagacattgatccaacc
ctagcatttatacagtacatgaaatttgctagaagagcggaggggataaaatcagcgcgg
cagatctttaagatggctcgtgaggagaataggactcgataccaagtgtttgtagccgct
gccctgatggaatactactgcagcaaggaaaagacagtggctctgaagatatttgagttg
ggattgaaaaagtatggtggaatacctgagtatctgctgtgctatatggattttatgtcc
catttaaacgaggacaataacacacgagtcttgtatgagcgggtattgtcctctgggcag
gtgcccccggagaagtcaatagagatctggagtcggtttctggccttcgagtcggaggtg
ggggatctggctagtatacagaaggtggaaaagaggcgagctcaggccatagaaaaggtc
caggagtttgaggacaaagacacagcactgttgatagacaggtacaagtacctagacctc
tatccctgtaccaccagtgagctcaaagcagtgggatactttgacctggccaggcaacaa
gtggtgaccctcccctccgcctcggtgaccaaggtcgtcctggaagacgaggagagcaag
aacaaacctcagtaccccaaacccgacgtggagcagatgatagccttcaaacccaggcag
attgtccctgttggggcccatcctgtgcccggaggggaattccccccaccccctgcagct
gccaacctcatctcacagctaccaccaccagattgttttcatggaccatttgtcattatg
gataagtttatagaacatttcaaccaaatggtgttgcctgaagcacctgttggaacagag
aatggaatagatggctcatttaaacttgatccagggacccagctctccatagactttgct
ctaggcaggaaaagaaaggtcactgaaggtgaagatagtgacgaggaggggtcagagaaa
catgtggtgcactggtttcggaaaggacttcgattacacgataatccgtccctccgtgag
gcgttgaagggggctgcgacttatcgatgtgtttacattctggatccttggttcgccgga
tcatcacaagtcggaattaacaaatggaggtttttacttcagtgtttagaggatctggac
acatccctccggaaactgaattctagattgtttgtgctacggggccaacccacagacttg
tttcctaaaatattcaaggaatggaacatcacaacactgtcgttcgaggaggacccagag
ccctttgggaaagaacgggacagtgctattcagatgctggccaaagaagccggaatcgaa
gttatcgtcaggacttcacacaccctctatgatctccaaaaaataatctcaatgaatggt
ggctcaccaccgctgaccttcaaaaggtttcaatccgttctgtccaaaatggaaccacct
tgtgaaccggaagagaccattaccagctcattcctggagaaaaagaaaacaccaataact
gaagaccacgatgacaaatatggggttccgacgctagaggaattaggttttgatacagag
ggtttaggcccagcggttttccatggaggtgaagcagaggctttaaccaggttggaaaga
cacttggaacgaaaggcgtgggtggcgagttttgagagaccaaaaatgtcccaacagtct
ctgtttcccagtcaaaacgttcttagtccctacctaaggtttggctgcctctctgctcgc
ctattctactggaaactacgagaattatacagaaaggtaaaaaagaggaaaattcccccc
ttgtccctacatggtcagttgttgtggagggagttcttttacacagtagccaccaacaac
ccaaactttgacagaatgaaagacaaccccctctgtgtacaaataccctgggataaaaat
ccagaagccttagctaaatgggcagagggtaaaactggattcccttggattgatgctatc
atgattcaacttagacaaacggggtggatccataatttggcccgccactcagtggcctgt
tttctgactcgaggggacctctggatctcatgggaagagggaatgaaggtgtttgaggag
ctgttgctggacgcggactggagtgtcaatgccggcatgtggatgtggctctcctgtagc
tccttctttcagcagttctttcattgttactgtccggtgggctttggcaaacgagctgac
cctactggagactttatcagaacatacttaccggtgttgaagggctacccagccaagtac
atatatgagccctggacagcgccagagagtgttcagagggcagccaagtgtattattggc
aaggactaccctgttcctatggtgaaccacgccgaggtcagcaaactcaacactgggcgc
atgaagcaggtgtaccagcagctggcattgtatgcttccatagcagcagttccaaagcaa
atccactcagaagaaccatatagcaattcaaaagccatgcattctgggaaccatccatca
agggtagccatgattgagaatactgaccatggaaaccacggccagatgtctgctgaagag
ggagataaccagcatcagtttttagcagcctag
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