Crassostrea virginica (eastern oyster): 111103429
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Entry
111103429 CDS
T09197
Name
(RefSeq) cleavage stimulation factor subunit 3-like
KO
K14408
cleavage stimulation factor subunit 3
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111103429
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111103429
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
111103429
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
FAD_binding_7
DNA_photolyase
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
NRDE-2
Motif
Other DBs
NCBI-GeneID:
111103429
NCBI-ProteinID:
XP_022292416
UniProt:
A0A8B8AMX0
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Position
7:complement(28930555..28966247)
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AA seq
1250 aa
AA seq
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MSTGSHAGGVLPPEQIGYIPDKLKKAEKRIEAFPYDTEAWSVLIRDAQMKPIEVARQVYE
RLVTQFPNAGKYWRIYIEQELKAKNFERVEKLFQRCLVKILSIDLWKLYLNYIKDTKGKL
PSYREKMAQAYDFALDKMGMDIMSYQIWVDYINFLKSVEAVGSYAENQQITAVRKVFQRG
VVNPMINIEGLWKDYCQYEQNINPLIAKKMTEDRGREYINARRVAKEYEAVTRGLNKNLP
SVPPQNNPDEAQQVDLWKKYIAWEKSNPLRTEDHALITKRVMFAYEQCLLCLGHHPDIWY
EAATYLEQSSKILTEKGDQNAGKMFADEAGSIYERAVTTLMKNNMLVYFAYADFEESRMK
YEKVHGIYKKLLVVQDIDPTLAFIQYMKFARRAEGIKSARQIFKMAREENRTRYQVFVAA
ALMEYYCSKEKTVALKIFELGLKKYGGIPEYLLCYMDFMSHLNEDNNTRVLYERVLSSGQ
VPPEKSIEIWSRFLAFESEVGDLASIQKVEKRRAQAIEKVQEFEDKDTALLIDRYKYLDL
YPCTTSELKAVGYFDLARQQVVTLPSASVTKVVLEDEESKNKPQYPKPDVEQMIAFKPRQ
IVPVGAHPVPGGEFPPPPAAANLISQLPPPDCFHGPFVIMDKFIEHFNQMVLPEAPVGTE
NGIDGSFKLDPGTQLSIDFALGRKRKVTEGEDSDEEGSEKHVVHWFRKGLRLHDNPSLRE
ALKGAATYRCVYILDPWFAGSSQVGINKWRFLLQCLEDLDTSLRKLNSRLFVLRGQPTDL
FPKIFKEWNITTLSFEEDPEPFGKERDSAIQMLAKEAGIEVIVRTSHTLYDLQKIISMNG
GSPPLTFKRFQSVLSKMEPPCEPEETVTSSFLEKKKTPITEDHDDKYGVPTLEELGFDTE
GLGPAVFHGGEAEALTRLERHLERKAWVASFERPKMSQQSLFPSQNVLSPYLRFGCLSAR
LFYWKLRELYRKVKKRKIPPLSLHGQLLWREFFYTVATNNPNFDRMKDNPLCVQIPWDKN
PEALAKWAEGKTGFPWIDAIMIQLRQTGWIHNLARHSVACFLTRGDLWISWEEGMKVFEE
LLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVGFGKRADPTGDFIRTYLPVLKGYPAKY
IYEPWTAPESVQRAAKCIIGKDYPVPMVNHAEVSKLNTGRMKQVYQQLALYASIAAVPKQ
IHSEEPCSNSKAMHSGNHPSRVAMIENTDHGNHSQMSAEEGDNQHQFLAA
NT seq
3753 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacaggttcgcacgccggtggcgtgttgccaccggagcaaataggctatatccca
gacaaactaaagaaagcagaaaaacgcattgaagcattcccatatgatacagaggcatgg
agtgttttgattcgagatgcacagatgaaacccatcgaagttgcacgccaagtttacgag
agactggttacacaatttcccaatgctggcaaatattggaggatttatatagaacaagag
ttgaaagcgaagaattttgagagagtagaaaagctatttcaaagatgtctggtgaaaatc
ctcagcattgatctctggaaattatacctgaattacatcaaggacacaaagggaaaattg
ccttcatacagagaaaagatggcccaggcatatgattttgctctggacaaaatggggatg
gacatcatgtcataccaaatctgggtcgactatataaacttcctcaaatcagtggaggca
gtgggctcttatgctgagaaccagcagattacagcggtgaggaaggtcttccagaggggt
gtggtcaatcccatgattaacatcgaagggctgtggaaggactactgccagtatgaacag
aatataaatccactgatcgctaaaaagatgacggaggataggggtcgagaatacatcaat
gccaggagggtggccaaggagtatgaggccgtcacgaggggcctcaacaagaatctcccc
tcggtgccccctcagaataaccctgatgaagcccaacaggtggacttgtggaaaaaatac
atagcttgggagaaaagtaaccctttgagaactgaggaccatgcactgatcacaaaacga
gtaatgttcgcctatgaacagtgtctgctgtgtctcggacatcacccagatatttggtac
gaggctgccacatacctagagcaatcaagcaaaattctaaccgagaaaggggaccagaat
gctgggaaaatgtttgctgacgaggcaggatctatctatgagcgagctgttactactctt
atgaaaaacaacatgctagtgtactttgcatatgcagattttgaggagagtagaatgaag
tacgagaaagtccatggtatatataaaaaattactggtagtacaagacattgatccaacc
ctagcatttatacagtacatgaaatttgctagaagagcagaggggataaaatcagcgcgg
cagatctttaagatggctcgtgaggagaataggactcgataccaagtgtttgtagctgct
gccctgatggaatactactgcagcaaggaaaagacagtggctctgaagatatttgagttg
ggattgaaaaagtatggtggaatacctgagtatctgctgtgctatatggattttatgtcg
catttaaatgaggacaataacacacgagtcttgtatgagcgggtattgtcctctgggcag
gtgcccccggagaagtcaatagagatctggagtcggtttctggccttcgagtcggaggta
ggggacctggctagtatacagaaggtggaaaagaggcgagctcaggccatagaaaaggtc
caggagtttgaggacaaagacacagcactgttgatagacaggtacaagtacctagacctc
tatccctgtaccaccagtgagctcaaagcagtcggatactttgacctggccaggcaacaa
gtggtgaccctcccctccgcctcggtgaccaaggtcgtcctggaagacgaggagagcaag
aacaaacctcagtaccccaaacccgacgtggagcagatgatagccttcaaacccaggcag
attgtccctgttggggcccatcctgtgcccggaggggaattccccccaccccctgcagct
gccaacctcatctcacagctaccaccaccagattgttttcatggaccatttgtcattatg
gataagtttatagaacatttcaaccaaatggtgttgcctgaagcacctgttggaacagag
aatggaatagatggctcatttaaacttgatccagggacccagctctccatagactttgct
ctaggcaggaaaagaaaggtcactgaaggtgaagatagtgacgaggaggggtcagagaaa
catgtggtgcactggtttcggaaaggacttcgattacacgataatccgtccctccgtgag
gcgttgaagggggctgcgacgtatcgatgtgtttacattctggatccttggttcgcggga
tcatcacaagtcggaattaacaaatggaggtttttactacagtgtttggaggatctcgac
acatccctccggaaactgaattctagattgtttgtgctacggggccaacccacagacttg
tttcctaaaatatttaaggaatggaacatcacaacactgtcgttcgaggaggacccagag
ccctttgggaaagaacgggacagtgctatccagatgctggccaaagaagccggaatcgaa
gttatcgtcaggacttcacacaccctatatgatctccaaaaaataatctcaatgaatggt
ggctcaccacccctgaccttcaaaaggtttcaatccgttctgtccaaaatggaaccacct
tgtgaaccggaagagaccgttaccagctcattcctggagaaaaagaaaacaccaataact
gaagaccacgatgacaaatatggggttccgacgctagaggaattaggttttgatacagag
ggtttaggcccagcggttttccatggaggtgaagcagaggctttaaccaggttggaaaga
cacttggaaagaaaggcgtgggtggcgagttttgagagaccaaaaatgtcccaacagtct
ctgtttcccagtcaaaacgttcttagtccctacctaaggtttggctgcctctctgctcgc
ctattctactggaaactacgagaattatacagaaaggtaaaaaagaggaaaattccccca
ttgtccctacatggtcagttgttgtggagggagttcttttacacagtagccaccaacaac
ccaaactttgacagaatgaaagacaaccccctctgtgtacaaataccctgggataaaaat
ccagaagccttagctaaatgggcagagggtaaaactggattcccttggattgatgctatc
atgattcaacttagacaaacggggtggatccataatttggcccgccactcagtggcatgt
tttcttactcgaggggatctctggatctcatgggaagagggaatgaaggtgtttgaggag
ctgttgctggacgcggactggagtgtcaatgccggcatgtggatgtggctctcctgtagc
tccttctttcagcagttctttcattgttactgtccggtgggctttggcaaacgagccgac
cctactggagactttatcagaacatacttaccggtgttgaagggctacccagccaagtat
atatatgagccctggacagctccagagagtgttcagagggcagccaagtgtatcattggc
aaggactaccctgttcctatggtgaaccacgccgaggtcagcaaactcaacacagggcgc
atgaagcaggtgtaccagcagctggcattgtatgcctccatagcagcagttccaaagcaa
atccactcagaagaaccatgtagcaattcaaaagccatgcattctgggaaccatccatca
agggtagccatgattgagaatactgaccatggaaaccacagccagatgtcagctgaagag
ggagataaccagcatcagtttttagcagcgtag
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