Crassostrea virginica (eastern oyster): 111104077
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Entry
111104077 CDS
T09197
Name
(RefSeq) E3 ubiquitin-protein ligase parkin-like isoform X1
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn04120
Ubiquitin mediated proteolysis
cvn04137
Mitophagy - animal
cvn04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
111104077
04120 Ubiquitin mediated proteolysis
111104077
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
111104077
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cvn04131
]
111104077
04121 Ubiquitin system [BR:
cvn04121
]
111104077
03029 Mitochondrial biogenesis [BR:
cvn03029
]
111104077
Enzymes [BR:
cvn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
111104077
Membrane trafficking [BR:
cvn04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
111104077
Aggrephagy
Other aggrephagy associated proteins
111104077
Xenophagy
Other xenophagy associated proteins
111104077
Ubiquitin system [BR:
cvn04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
111104077
Mitochondrial biogenesis [BR:
cvn03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
111104077
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
IBR_2
ubiquitin
IBR
IBR_1
Ubiquitin_5
Rad60-SLD_2
Dsc3_N
Rad60-SLD
TECR_N
Crinkler
OTU1_UBXL
Ubiquitin_2
Motif
Other DBs
NCBI-GeneID:
111104077
NCBI-ProteinID:
XP_022293516
UniProt:
A0A8B8AR29
LinkDB
All DBs
Position
7:complement(47336376..47348468)
Genome browser
AA seq
418 aa
AA seq
DB search
MATLFVNVKFSSTSSCPLEADPNSSVGELKSLISDKTGVSRSDLQLILAGKVLQDSQTLN
DLGVGNHTVLHAFQQRGSPRLEVNAQVGLNQLGASNSATVYPYQFFVYCKKCIKLRPGKL
RVVCGRCLQGNIILHQEPSCFEDVLLPGRIQGSCQNCKTHQDSKFYFKCSCDHGDLDELQ
GQCAVLRHIKPNRRNRECITCTDVQQPVLVFPCAKKHVICIDCFISYCIVQLNERRFIED
PEAGYSLPCPAGCHGSLIKDAHHFCLLGTEQYERYKNFGAEEYLLQSGGLMCPAPRCGAG
FLVEDPTLKVVCPTCQYEFCRECRAAYHPGEECSTQHYSDPTIDQERELSQEQALRAQYD
LDSMETIEKISKPCPQCKAKTERSGGCMHMTCTVCKTDWCWICEKAWNRDCQGNHWFG
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atggcaacactttttgttaatgttaaatttagttcaacctcatcttgccctttagaggcg
gatcccaattcgtccgtgggggagttgaagagtttaattagtgataagacgggggtcagc
cgctccgatctacagctgattttggcagggaaggtgttgcaggactcgcagacactgaac
gatctaggggtgggtaaccacacagtgctacatgcattccaacagaggggatcccctcga
ctggaggtcaatgctcaggtggggctgaatcagctgggtgccagcaactcagcaacagtt
tatccatatcagttctttgtgtactgcaagaaatgtatcaaacttcgaccaggaaagcta
agagttgtgtgtggacgttgtctccagggcaacatcattctgcatcaggaaccaagttgt
tttgaagatgtgttgctgcctggcagaattcagggatcatgtcaaaactgtaaaactcat
caggactcaaaattctattttaagtgttcatgtgatcacggtgaccttgatgagcttcaa
ggtcagtgtgctgtgctgaggcacatcaagccaaacagacgcaaccgagaatgcatcacc
tgcaccgatgtccaacagccagtgttagtttttccttgtgccaaaaaacatgtgatttgc
atcgactgcttcatctcctactgcatcgtacagctgaatgagcggaggttcatcgaggac
ccggaggcgggatacagcttaccttgtccagcgggctgtcacggttcactaattaaggat
gcacatcacttctgtctgctgggaacagaacagtatgagagatacaagaactttggggct
gaggagtatctgctacagagcggagggctgatgtgtccggctccgaggtgtggggcaggg
ttcttggtggaggatccaaccctcaaagtggtgtgtccaacctgtcagtatgaattctgt
cgagaatgtcgagctgcctatcatcctggggaggagtgtagtactcaacattacagtgac
cctaccatagatcaggagagggaattgagccaagagcaggctttgagggctcaatatgac
cttgattcaatggaaaccattgagaaaatctctaaaccctgcccacagtgtaaagccaaa
acggagagatcaggaggctgtatgcacatgacctgtacagtgtgcaagactgattggtgc
tggatctgtgagaaggcctggaacagggattgccagggcaaccactggtttggatga
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