Crassostrea virginica (eastern oyster): 111104257
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Entry
111104257 CDS
T09197
Name
(RefSeq) cartilage intermediate layer protein 1-like isoform X1
KO
K24436
cartilage intermediate layer protein
Organism
cvn
Crassostrea virginica (eastern oyster)
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
cvn04990
]
111104257
Domain-containing proteins not elsewhere classified [BR:
cvn04990
]
Thrombospondin domain-containing proteins
Other thrombospondin domain-containing proteins
111104257
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CILP_C
CILP_5th
Ig_3
Ig_2
TSP_1
TSP1_spondin
ShK
I-set
CILP
CarboxypepD_reg
Motif
Other DBs
NCBI-GeneID:
111104257
NCBI-ProteinID:
XP_022293811
UniProt:
A0A8B8ARW7
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All DBs
Position
7:complement(51511340..51568994)
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AA seq
1188 aa
AA seq
DB search
MNTIFFLSLYCSFVLWCHGKGFVESCRDLVSSCAEMPELCSSNEYLDWAKTNCPKYCGFC
NEPFSEKIKNENVGECADKISNCFWYDDSVCFGPNEEWARLSCPQRCGYCGNFESLCADQ
ISYCDKLSTSICTDKNYRSWSRMNCRKYCNLCEEPSKSTTTTTPTTTPAPLILDPLTENK
PQNGQWSDWDSWSDCTVSCGGGLRSRNRSCTDPPPENGGDSCIGISLQSEMCNPFMCPDC
NRACPFRGTLSDDCSVCHCTNTIAFGTVRDENNMPLGDVGVYIQSRQWEPLTTTNAYGQY
VTQGVCLMGENLVFKKDRYQESTGLARLRNLTHWICDTTLKQTVPPTFYVSPKDKVRMVG
QGVVLCCKADGRPGPEKYIWIKDGKEIKGGANGKLHMGNLNISHSGHYSCRVETYAGIAT
SKEAILSVKKQAQDTCNQKPDEYFIDLPDGCHTEELGGKKTRVDIGRCRKSQCITSTMSN
EVDCYDAWPKFCCSTDLTKPLMVNCTRFTYTITQTIACKCRECSTVTQISGEAYGKRHGT
KIPFKSGQLYLMGRLAGETNDNGFFSITVPGDEKEVVLLLKNDADNQFMSTLKTVKIIED
VNTYAEIVVPLKSKPILFNSNIGHTMALSNGNQTAFSHVSFPRDSFVTQDGKPFSGIVHA
SFNFMDPRNIDDIESAYGSLSTLGEDGREIPLDTYGMTSFTFNDDNGNSLTLNSPVTYSI
DASQFNISIDEDGKSEIYEWYLDIKTGKWVKIAQFKTKNQLTNKRRLLSTTTLQVDVPPQ
PNIKIKREVTKLNRTTSVVSRTEYFIYYDKMYNFDRLGKRTGSRTVNTTRVKYVIDRKEE
ERDDACVVSVKVYQDTTFQLPLGAGISVTAVTYNPLSSKYSGRDVQTTNEKGIACLTIFC
NQNVTLYAKQSGTLTNLVTSNNHSLPGYYARTNINNNTGVMFEAIESSYDPKANKYSPVR
LLKEKPICLSPRRDDYHFQFAPLVKSEDFSPVFKEETRNILSWYTDAKDKQERRSCFLKV
RVTAPSDVQARLRIIAKSYQNVTGPDYNESKYYGMDNVGPIPDMSVTPVNFSERAACLEF
RCAGAAFDDKILLQNLTTYVDITTTNSDCTFSPRNEIMEAFDLEKYDVTGRRASFFFRAE
KNYGPVYGVYIQNGHRDNARNWCHAGGLNANNVMNTDESRTLGTFSCK
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgaacaccattttctttcttagtttgtattgttcctttgtcctttggtgtcatggaaaa
ggatttgtcgagagttgtagagaccttgtctcttcatgtgcagaaatgcccgaattgtgc
tcctcaaatgaatatttagactgggcaaaaactaattgtccgaaatattgcggtttttgt
aatgaaccgtttagtgagaaaataaaaaatgaaaatgttggtgaatgtgctgacaagata
agcaattgcttctggtatgacgacagtgtttgttttggaccaaacgaggaatgggctcga
ttgagttgtccacaacggtgtggatattgtggaaattttgaaagcctatgcgctgaccaa
atcagctattgcgataaattgagcaccagtatttgcacggacaaaaattatcgaagttgg
tcaaggatgaactgcaggaaatattgtaatctgtgtgaagaaccttccaaatcaacgact
actacaacgccaacaactacacccgcaccattaattttagatccattgactgaaaacaaa
ccacaaaatgggcaatggtctgattgggattcttggtcggattgcactgtgagctgcggg
ggagggttgcgctcaaggaatcgaagctgcaccgatcctcctcctgagaatggcggtgac
agttgtataggaataagtcttcaaagcgaaatgtgtaatcctttcatgtgcccagattgt
aaccgtgcttgtccattcagaggaaccttgtctgacgattgtagtgtatgtcattgcacc
aataccattgcatttgggacagttagagacgaaaacaacatgccattaggtgatgtcggg
gtttacatacagagtcgccaatgggaaccactaacaacaacaaatgcttacggacaatat
gtcacgcagggggtctgccttatgggggaaaatcttgtttttaagaaagaccgatatcag
gagtctacgggactggctagattgagaaatttaacccattggatttgcgatacaacttta
aaacagacagtgcctccaacattttacgtatctccgaaagataaagttcgtatggttggg
cagggtgttgttttgtgttgtaaggcagacggaagaccaggcccagagaagtatatctgg
attaaagatggtaaagaaatcaaaggaggggccaatggcaaattgcacatggggaacctt
aatatatcacattctggtcattattcctgtcgagtggagacatatgctggaatagcaaca
tctaaagaagcgattctttctgttaaaaaacaagcacaagacacatgtaaccagaaacca
gacgaatactttatagacttacccgacggatgtcacacagaagaattaggggggaaaaaa
acccgagttgatatcggtcgttgtagaaaatcacaatgcatcacatctacaatgtcaaat
gaggtagactgttatgatgcatggccaaagttttgttgctctaccgatttaaccaagcca
ttaatggtaaattgtactcgattcacatacacaatcacccaaacaattgcatgcaaatgc
cgtgaatgttcaactgttactcagatctcaggagaagcatatggaaaacgacatgggaca
aagattccattcaaatcaggacaactttacctaatgggtaggttagctggcgaaacaaat
gacaatggattttttagtattacagtacctggcgatgaaaaagaagttgttcttctgtta
aaaaacgatgctgataatcaatttatgagtactttgaaaacggtcaaaataatcgaagac
gtgaatacatatgctgaaatcgttgttcccttaaaatccaagcctattttattcaattct
aatattggtcatacgatggccctttcgaatggtaaccagactgccttttctcatgtttcg
tttccaagggattctttcgtaacacaggatggaaaaccgtttagtggaatcgtccatgca
tcctttaattttatggatccacgaaacattgacgatattgagtcagcgtatggaagtcta
agtacactaggagaagatgggagagagattccgctcgacacgtacggaatgaccagtttt
accttcaatgatgataatggaaatagcttgacattgaactctcctgtaacatacagcatt
gatgcttctcaatttaacatctcaatagacgaagacggaaaatcagaaatatacgagtgg
tatctggatataaaaactggcaaatgggttaaaattgctcagtttaagacaaaaaatcag
ctaacaaataaacgacgtctgttgtccacaacaacacttcaagttgatgtcccaccacaa
cccaatataaaaattaaaagagaggtcacgaagttaaaccgtacgacgtctgttgtttca
aggaccgaatactttatctattatgataaaatgtataattttgatagattgggtaagcga
acaggatcgcgaacagttaatactacaagggttaaatatgtcattgataggaaagaagaa
gaaagagatgatgcttgcgtcgtttctgtaaaggtgtatcaagacacgacatttcaattg
ccattaggagcagggatttccgtaacggctgttacgtataatccattaagttccaaatat
tccggaagagatgtacaaacaacgaatgaaaaggggattgcctgtcttaccatattttgt
aaccaaaacgttacattgtacgcaaaacagtctggaacactgacaaatttagtaacttcg
aacaatcactctcttccaggctattacgcgagaacaaatattaacaataatacgggagta
atgttcgaggcaatagaaagctcgtatgatccaaaagctaacaagtatagccctgtacga
ttgttaaaggagaaaccaatatgcttgagtccaagaagagatgattatcatttccagttt
gctcctttagtaaaaagcgaagatttttcacctgtgttcaaggaggaaacacgaaatata
ttgtcctggtatactgacgcaaaagataagcaagaaagacggtcatgttttttaaaagtt
cgagttacggctccttctgatgttcaagcgagattaagaataatcgcaaaaagctatcaa
aacgtaacaggtcctgactataatgaatctaaatattatggaatggataatgttggacct
attcctgatatgtctgtaacaccagtgaatttcagcgaaagagcagcttgtttagagttt
agatgtgctggtgcggcttttgacgacaaaatactcttgcagaatttaacaacatacgtt
gatataactacaacgaacagcgattgcacattttcaccgcgaaatgagatcatggaggca
tttgacttggaaaaatacgacgtaaccggtagacgtgcgtcatttttctttcgggcagaa
aaaaactatggtccagtatatggtgtctacattcagaatggtcatagagacaatgcaagg
aattggtgtcatgctggaggtttgaatgcaaataacgttatgaacacagatgaatcaaga
acacttggaaccttcagttgtaaatga
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