Crassostrea virginica (eastern oyster): 111104315
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Entry
111104315 CDS
T09197
Name
(RefSeq) histone-binding protein RBBP4 isoform X1
KO
K10752
histone-binding protein RBBP4
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03082
ATP-dependent chromatin remodeling
cvn03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111104315
03083 Polycomb repressive complex
111104315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cvn03036
]
111104315
Chromosome and associated proteins [BR:
cvn03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
111104315
Histone modification proteins
HAT complexes
HATB complex
111104315
HDAC complexes
Sin3A-HDAC complex
111104315
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
111104315
PRC2.2
111104315
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
111104315
Heterochromatin formation proteins
Other heterochromatin formation proteins
111104315
Chromatin remodeling factors
NuRD complex
111104315
NuRF complex
111104315
NuRF complex (fruit fly)
111104315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
CAF1C_H4-bd
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR75_1st
Beta-prop_EML
WD40_MABP1-WDR62_2nd
EIF3I
WD_LRWD1
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
Beta-prop_WDR19_1st
ANAPC4_WD40
Beta-prop_DCAF12
Beta-prop_RIG_1st
WD40_MABP1-WDR62_1st
eIF2A
Beta-prop_SPT8
NBCH_WD40
MIOS_WD40
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
111104315
NCBI-ProteinID:
XP_022293896
UniProt:
A0A8B8AS71
LinkDB
All DBs
Position
7:complement(41439060..41449767)
Genome browser
AA seq
435 aa
AA seq
DB search
MTDKDALSSFEVEGFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDV
TRPEGKDYSLHRLILGTHTTRTDEMNNLLIASIQLPNDNSTFDASMYDSERGEFGGFGSV
SGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPEL
RLKGHQKEGYGLSWNPNLNGHLLSASDDHTICLWDINQNPKENRVIEAHTIFTGHTSVVE
DVAWHLLHESLFGSVADDQKLMIWDTRSNNTTKASHIVDAHTAEVNCLSFNPYSEFILAT
GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG
EEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYND
EEPDTPAAELESGTS
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgacggataaagacgcactttcatcttttgaagtcgaggggtttgatgatgcagtggag
gagagagttattaatgaggagtataagatctggaagaagaacaccccctttctgtatgac
ctggtgatgacccatgccttagaatggcccagtctcactgctcagtggctcccagatgtt
acaagaccagaaggcaaagactattctctacacagattaatcttaggaacacacacgaca
aggacagatgaaatgaacaatttgctgatcgccagtattcagcttcccaatgataattct
acatttgatgcctccatgtacgattcggaaaggggagaatttggagggtttgggtcagtt
agtggtaaaattgagattgagataaaaataaatcacgagggagaggtgaatcgagcccgt
tacatgccccagaacccgtgtatcatcgccaccaagacaccctccagtgatgtcctggtg
tttgactacacaaagcacccatccaaaccagatcctagtggtgaatgcaatcctgaatta
agactaaaaggacatcaaaaagaagggtatgggttatcctggaatcccaatctgaatgga
catctactcagtgcatcagatgaccacacgatttgtttgtgggacattaatcaaaatccc
aaagaaaaccgagtgatagaagcacacaccatctttactggacatacctcagtagtggaa
gatgttgcttggcatttactgcatgagagcctgtttggatctgtagctgatgatcagaag
ttgatgatatgggacacgaggtccaacaacacgaccaaagccagtcacatcgtagacgcc
cacacggcagaggtcaactgtttgtccttcaacccgtacagcgagttcatcctggccact
ggatcagctgacaagactgttgccttgtgggatcttcgaaatcttaaactcaaacttcat
tcatttgaatcgcacaaagatgaaattttccaggttcagtggtccccacataatgagact
atcctggcctccagtggaacggaccggcgactgcatgtgtgggatctcagcaaaatagga
gaggagcagtctgctgaggatgctgaagacggacctccagaactcctgttcattcacggc
ggacacacagcaaagatatctgacttttcctggaacccgaatgaaccctgggtcatctgc
tccgtctccgaggacaacatcatgcaagtctggcagatggcagaaaatatttacaatgat
gaagagcctgacactccagctgcagagcttgaatcaggaacttcatag
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