Crassostrea virginica (eastern oyster): 111104445
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Entry
111104445 CDS
T09197
Name
(RefSeq) small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
cvn
Crassostrea virginica (eastern oyster)
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cvn03009
]
111104445
Ribosome biogenesis [BR:
cvn03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
111104445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
NYD-SP28
SCD
Xpo1
Raftlin
Motif
Other DBs
NCBI-GeneID:
111104445
NCBI-ProteinID:
XP_022294115
UniProt:
A0A8B8ASF4
LinkDB
All DBs
Position
7:21465300..21502198
Genome browser
AA seq
2770 aa
AA seq
DB search
MGKSKAENTFKFQSFTERIAGVNIDVIHKIRHHDDTPDETSTYFCEALQKWSELNCTEHF
TNFRKEISERVQTFAQLVHHKEEIISALKTHLVVPDSLALGALLNLLVQLARDLQTDFYQ
YFHDFFDILVGLLGKNAQNPELLEQIFSALSYIFKFLWRYLVRDIKDVYQYFSTLLRNSN
KEYIVNFAAESFAFLMRKVKNHGELFDFLFLTLEESPETAEGVGRLLFEMVKGVQKQFHS
CTQKTFPIVLRKLGVCQEGTYEELPWDQVETAITEMFLSMAKHTDKKNSSEIWKILIGTV
EDVYKFWAKATKKTKERVSDHLLHLLRLMNVWLNHKGGKIIAESESIAQCLLTILRGDNL
PVIVGGQLLDDVASLLITCSTVLPVETTVKLVTSVYKTSYPENVVYSFTKAVLELSIFEK
DVLPSLLPYCHQVMCGKDPTSQQHTIHLLTHVIQQKAPPPEDGSQLAELQTYMMDFGVNK
KSGVPSHVMSVLETASTSVAAGRDLEDLPGVWSAIVLLPHVRPVLDKKKAIHCVTSLFMN
LLKKITEDTKEISIGEALNIMYHCLLALLYMQDDGELFESIPQSEVISLLRQHPDDITAL
KMADLYFTQASLEGSTEVTSEDSLLQIYSLLEKNLFSPYSKVRMLTLRVFSQFSFRLPSQ
EDEDHNLDVFRICLEAELVPLNVQDFRRKLLFLQKLQFDIVQKSVPVGPFTLVPLKYLFG
ALHISFKLLWEPLTKLIASHEAGLDKTVFWELFRQMLQEAAHKCEEGINQTEIQPSQEEE
PMEEDDTLRQLFVESCKSHETTEKPDHVNFRFYLWKSMRLFSDLCEKKNRDIVPLFFDFM
SKEYYNVDLSAAPTQNIQKREMLDSAEDTDDEDEEDEEEKEEDHVLTRAESKKKEEKKTE
RPSKISEAKTEMEEEEENENKRGKQKKGKTRERRTKSNGPKLKTRAATSSLLVHLELFSK
FSSPKSLYRESELRQLYDQLLLHKNGRVQKEAFSCIMTYKHRYLVPYRENFENLLDDAKF
KTEIVLFSIDQENSILSEEHRAQVLPILMRILYGKMHSKTGKDSAGKSNSQFRRSIVFRF
LNGCSGQEIIQFMDMVFESFRHFVTDDVLAMVCKTERELDLSKVIPLRKMTGALNTVDMI
VKKLGHLIEGYLPSLESILLGLTATCGACLERREQVTPKALKPLKNLRQLCITQIHQFYD
VFDSYKFSPKEIDAMFHVAVWPQLSKLEFEGIYHPTPLLKLLHTCATNRRYWTLLAKCHD
TDLTLTPIKAVLKLLNVKDVNKSVSDFIIDMLDHLLSKDEDEELENITMATPVKVNKMMH
IQALEVEQFGAELLKPHVSDILTYIQKAIRSIKGHGRRSQAAGKELSILSRISEFVTDQS
ECLSLIELLLPFLGEGLSRTPDTEVNILNSIRNLLEKAQDQKKFYRSICRLLGYIQNRHS
RILLCQLIQVIATSNEDLKVISQLLAELNAWDPKHTEEPDYLKRLNAHKRVNEAIQKMEG
ALDVDFLFPVLHSCCYCIKMIDDMSLRDNATHTLVTMVKQFSHVTYDQNDFRDLISNGLV
HEIKAGFRSKKETVRHEFIALLSVLADTFPSHDMFADLVKLKDKDVEADFFENIRHIQTH
RRSRALKKMNRTLQCRQIRKEILVSYFLPLTTSFLLDETYTKAQGLQESAIDAMATLCKQ
LPWHVYINQLKYFLSLLSKKFEKKKLLVRVIVGILDAFHFDLRNSQHAVVNLPDAIAKKK
AKGEITEEPNPFDETEKESEAEIPTVPEEGDETVDTTSNPSSKPDSMVICSVGQATRIHC
TIMKSVIPHLQRCLTKKEKSEDEHKLVRTNYAEDSEVLRVPIALAMIKLLQNLPHKSLEH
NLPGILLKVCNFMKSRAVEIRNTARDTLVKITTSLGPRFFPFILSELRGTLRKGYQVHVL
CYTVFVLLKNLLPVLKPGDLNVCRASLQDVFHEDLFGQVAEEKEVAGVTSKLFEARSMKS
YDSYKILAQVISRDSLMAFITPIKEVLISTHSHTIARKVQEVLKKVVTGLLDNPALDTES
LMIFTHGLITQSFPQLSENQSKKKPSEENTAQPIRPPSCLLLPEEPKRGGDKPRLSKKTN
IHVLVEFGLQLLCMCLKRGRLVATEESHLQLVDPFITLLTDCLYSKHIRINTLSLRSLCW
LLRFNLPSVNNNIKKLANGMFIILKNYASAGASKGENLELISMAFKAVTVLVRDVKMYKL
EETQLQVLLTFCEEDLYDYNRQSTAFSLLKAILSRKLNVPEVLELIKKVEDMSITADSPH
VRRECRQIALQYILEYPLGKLLNKHLEYYITQLSYEMEMGRESALEMLATIFSSFPQKIL
NDNAGMFYVPMSASLVNDESTKCRKLTALAIKSLLQKIDHNSRNELFNITQKWFTDDKIS
HRILAAQLTGLFIEVESVKFTHHLSVILPIIQQQIDPGRYEDNSRSSDGETERDRLLFNC
LNTLVKLLRECNLIRDAKWTPEMNIIWESVVSHLGYVHVWVQLAACQLIGLLFASWTPEE
ILQPPEKSAEIDFIKVDSMNKLENLAMDLISQLQSPYLTEELANQIIKNMVFIAKVAKLI
STKESSIEPGIVAKTNGDAKSKKCLSLKWLFKKMIREANHEAVNQTKTTIKRSSVFKWVA
AVSMDLGPTLLPSVVPIMMPALQRETNENNPNTDPALKSLAQEVLDILRKILGVETYTQL
FAKTHKEQFDRKETRKRKEAVEAVSNPQHAAKRKMKKNLAKREAKKRKLEEFRVSKKIKK
RKVKDMAITS
NT seq
8313 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaatctaaggcagaaaatacatttaagttccagtcttttacggagaggattgct
ggtgtgaacatagatgtcattcacaagataaggcatcatgatgataccccagatgaaact
tcaacatatttctgtgaagctttgcaaaaatggtcggagttgaattgcactgaacatttt
acaaactttaggaaagagatcagtgagagggtgcagacatttgctcagttagttcaccac
aaggaagaaataatatctgctctgaagactcacctggttgttcctgacagtttggcactc
ggagccctcctgaatctcttggtgcagttggcaagagacctacagactgacttctaccag
tacttccatgatttttttgatattctggtcggcttactcggcaaaaatgcccagaaccca
gagctcctggaacagatcttctcagctctgtcctacattttcaagttcctgtggcgttac
ctagtacgagatatcaaagatgtttatcaatatttttccaccctactgagaaacagtaac
aaggaatatatagtgaactttgctgccgaaagctttgcttttctgatgagaaaggtgaaa
aatcatggagagttgtttgacttcctgtttcttactttggaagagtcgcctgagacagct
gagggtgttggacgactactgtttgagatggtcaaaggggtacagaaacagtttcacagc
tgtactcaaaagacattccccattgtactgagaaaactgggagtatgccaggaaggaaca
tatgaagagttgccgtgggaccaggtggaaactgcaatcactgaaatgtttttatcaatg
gcaaaacacacagacaaaaagaactcctctgagatctggaagattttgattggtacagtt
gaggatgtgtacaagttttgggcaaaagccaccaagaaaaccaaggagagagtttctgat
cacttgcttcatctcttacggcttatgaatgtgtggctgaatcataaaggaggaaaaatt
attgcagaatctgaaagtatagcccagtgtttattgacgatactaaggggagacaacttg
cctgttattgtgggaggtcagttgttggatgatgtggctagtctactgattacctgttct
acagtcttacctgtggagaccacagtcaaactagtcactagtgtgtacaaaacaagctat
cctgagaatgtagtatattcctttaccaaggctgtgcttgagctctccatatttgagaag
gacgttctgccctctctcttgccgtactgccaccaggtgatgtgtgggaaggatcccacc
tctcaacagcacacgatccacctactgacgcatgtcattcaacagaaagccccgccccct
gaggatggcagccaattagctgagctgcagacctacatgatggactttggggtcaacaag
aagtctggtgttcctagccatgttatgtcagtactggagacagcctcgacatcagtagct
gcagggagggacctggaggatttacctggggtctggtcagccatagtgctcctgcctcac
gtcagacctgttcttgacaagaaaaaagctattcattgtgtgacatcattgtttatgaac
cttttgaagaagattacagaagacaccaaagagatttccataggtgaggccctaaacatc
atgtatcactgcctgctggcattactatacatgcaagatgatggggagttgttcgagagt
attccacagtcagaagtaatctcccttctaagacaacatcctgatgacatcacagcatta
aagatggctgatctctacttcacacaggcctcactagagggcagcactgaggtcacatcg
gaagactctctgctacaaatctactccctgctggaaaagaatctgttttctccatattcc
aaggttagaatgctgacactgagagttttctctcagttctcattcagactcccttcacag
gaggatgaggatcataacttggatgtgtttaggatctgtttggaggcagagttagttccc
ttgaacgttcaggacttcaggagaaagctactcttcctacagaagctacagtttgacatt
gtccagaaatctgttcctgttgggccatttactctagtccccttgaagtacttgtttggg
gccctgcacatcagtttcaagttactgtgggaacctctcaccaagctgattgccagtcat
gaggccggtctggacaaaacagtgttctgggagttattcagacaaatgctacaagaagca
gcccacaaatgtgaggaaggtatcaaccagacagaaattcagcccagccaagaggaggag
cccatggaggaagatgacactttgagacaactttttgtagagagctgtaagtcacatgaa
acaaccgagaaaccagatcatgtcaactttaggttctacctgtggaagtccatgcgtctg
ttttcagacctgtgtgaaaaaaagaacagggacattgttccactcttctttgactttatg
agcaaagagtattacaatgtggacttgtcagctgccccaacacagaacatacagaagaga
gagatgctggattctgcagaagacactgatgatgaagatgaagaagatgaagaggagaaa
gaagaagaccatgtgttaactagggctgagagtaagaaaaaggaagagaagaagacagaa
agaccgagcaaaatttcagaggctaagacagaaatggaagaagaggaagagaatgagaat
aaaagaggtaaacaaaagaaaggaaaaaccagagaaagaaggacgaaatcaaacggcccc
aaactgaagactcgagctgccaccagtagcctactagtccatctggagctgttcagtaaa
ttttccagtccgaaatccttataccgagaatctgaactcagacagctgtatgatcagctt
ctgcttcacaaaaacggtcgagtacagaaggaggcctttagttgcatcatgacctacaaa
catagatacctagtgccatacagggagaactttgagaacctgctggatgatgccaagttt
aagacggagattgtgctgttcagcattgaccaggagaacagcatcctcagtgaagagcac
agggcccaggtgctgcccatcttaatgaggatattgtatggaaaaatgcacagcaagact
ggaaaggactccgcaggaaaatccaacagtcagttccggcgatccatcgtgttccgattc
ctgaatggctgcagtggtcaggagatcatccagttcatggacatggtgttcgaaagcttc
cgtcactttgtcacagatgatgtcttggctatggtttgtaagacagagagggaactggac
ctatcaaaagtgattccattgaggaaaatgacaggggcattgaacacagtagacatgatt
gtgaagaagctaggccacctgatagagggttatctcccttccctggagtccattctcttg
gggctgaccgctacctgtggggcctgtctagagaggagggagcaagtgacccccaaggcc
ctgaagcccctcaaaaacctgaggcagctgtgtattacccagatacaccagttctatgat
gtgtttgattcctacaagttttctccaaaagagattgacgccatgttccatgtggctgtc
tggccacagttatccaagctggagttcgaaggaatataccaccctacaccattactgaag
cttttacacacgtgtgccacaaacagaaggtactggacactgttggcaaaatgccatgac
acagatttgaccttgacccccatcaaggcagttttgaaacttctaaatgtcaaggatgtg
aataagtctgtgtcggactttatcattgacatgctggatcatctgttatctaaggacgag
gatgaagagttagaaaatatcaccatggcaacaccagtcaaagtcaacaaaatgatgcac
attcaagcgttagaagtagaacagtttggagcagaattactcaaaccccatgtatcggat
atcctgacctacatacagaaagctattagaagcatcaaaggtcacggcaggaggtcacag
gcagctggtaaagagttgtctatcttgtctagaatcagtgaatttgtgactgaccaatca
gaatgcttgtcactgatagaactcctcctcccctttctgggggaggggcttagtcgaaca
cctgacactgaggtgaacattctgaacagcatcagaaacctgctggagaaagctcaggac
cagaaaaagttttacagatctatatgtcgccttttgggatacattcagaatcgtcattca
agaattttactctgtcaactgattcaggtcattgccactagtaatgaagatttaaaagta
atatcccagcttttggcagagctaaatgcttgggatcctaaacacacagaggagccagac
tacctgaagagactgaacgcccacaagcgagtcaatgaagccattcagaagatggagggg
gcgctggatgtggatttcctgtttcctgtgcttcactcctgttgctactgcatcaaaatg
attgatgacatgtcactaagagataatgccacccacacactggttaccatggtgaaacag
ttcagtcatgtgacctatgaccagaacgacttccgagatctgatatcaaatggattggtt
catgaaatcaaagcaggttttagaagcaagaaggagactgtgcgacacgagttcatcgcc
ctcctctctgtgctggccgacaccttcccgtcacatgacatgtttgccgaccttgtcaag
ctcaaggataaagatgtggaagcggacttctttgaaaacatcagacatatccagacacac
agaagatcaagggccctgaagaaaatgaacaggacattacaatgccgacaaattcgtaaa
gaaattctggtctcatattttctcccgctgaccacttccttcctgctagatgagacatac
accaaagcccagggtctgcaggagagtgccatcgacgccatggcaacgctgtgtaaacag
ttaccatggcatgtgtacatcaaccagctcaagtacttcctgtcactcttgtccaagaag
tttgagaagaaaaagctgctggtcagggtcatagttggtatcttggatgcatttcacttt
gacttaaggaattcccagcatgcagttgtcaatctaccagatgccatagcaaagaaaaaa
gccaaaggggagataactgaagagccaaacccttttgatgaaactgagaaggaatcggag
gcagaaattcccacagttccagaggagggagatgaaaccgtggatacgacctctaacccc
tcatccaagccagatagcatggtgatctgctctgtaggacaggccaccagaatacactgc
accataatgaaatctgtcattcctcatctacaaagatgtctgaccaaaaaggagaagagt
gaagatgagcacaagctggtgcggacaaactacgcagaggacagtgaagtgttgagggta
cccatagccctggccatgatcaagctgctgcagaacctcccccataaatctctggagcac
aatctcccaggcattctgttgaaggtttgtaactttatgaagtcccgtgcggtggagata
aggaacacagccagagacacactggtcaagatcaccacctccctggggccgcgcttcttc
cccttcattctatcagagctcagaggcaccctcaggaagggatatcaggtccatgtccta
tgttacactgtgtttgtgttgctgaaaaacctgttgcccgtcctgaaacccggggattta
aatgtgtgcagggccagtctccaagatgtgttccacgaggatctatttggtcaggtagcg
gaggagaaagaggtcgcaggagtcaccagtaaactgtttgaggcccgctccatgaagagc
tacgactcgtataaaattctggctcaggtcatcagtcgcgactcgctcatggccttcatt
actccaatcaaagaggtcttgatttccacgcacagccacaccattgccagaaaggtgcag
gaggttctgaagaaggtggtgacggggctgttggacaaccccgccctggatacagagtct
ctgatgatatttacccacggcctcatcactcagtccttcccacagctgtcagaaaatcag
agcaagaagaaaccttctgaagaaaacactgcccagcctataagaccaccaagctgcctg
ttattacctgaggaacccaagcgcgggggtgacaagccgcgcctcagtaagaagaccaac
atccacgtgttggtggagtttggcctgcaactgttgtgtatgtgtctgaagcggggacgc
ctggtggccacggaggagagccacctccagctggtcgacccatttatcaccctcctgacc
gactgtctgtactctaagcacatcaggatcaacacattaagcctgcgatctctttgctgg
cttctgagattcaatctaccctcggtgaataacaacatcaagaagctggctaatggtatg
ttcatcatcctgaaaaactacgcttcagcaggggcctccaagggagagaacttggagctc
atttccatggcatttaaggctgtgacggtgttggtgagggacgtgaagatgtacaagctg
gaggagacccagctacaggtgttactgaccttctgtgaggaggacctgtacgactacaac
cgacagagtaccgccttctccctgctaaaggccattttgtcacgtaaactgaatgtgccc
gaggtgttggagctgataaagaaagtggaggacatgtcaatcacagcagactccccccac
gtcaggagagagtgcagacagatagccctgcagtacatactggagtatccattgggaaag
ctcctgaacaaacatctagagtattacatcacccagctgtcttatgagatggagatggga
cgtgaatcggccttagaaatgctggcaacaatattctcctcatttccccagaaaatttta
aatgacaatgcaggaatgttctatgttcctatgtcagcctcgctagtcaatgacgagtcc
accaagtgcaggaaactgaccgctctggctattaagtccctcctacagaagattgaccat
aactccaggaatgaactgtttaacatcacccagaaatggttcactgatgacaagatcagt
catcgaattcttgctgctcagctgactggtctgtttatagaagtggagtctgtcaagttc
acacaccatttatctgtgatattacccataattcaacagcagattgatccaggaagatat
gaagataattcccggagttccgatggagagacagagagagacaggctgctgtttaactgt
ctgaatacactggtcaaattactgagagagtgtaatcttatcagggacgccaagtggact
ccggagatgaacatcatctgggagagtgttgtcagtcacctgggctatgtacatgtgtgg
gtgcagttggcagcttgccagctgattggtctattatttgcctcctggaccccagaggaa
atattgcaacctcccgaaaagtcagcagaaatagattttattaaagtggattccatgaat
aagctggagaatttagctatggacctgatctcccagttgcaatctccatatctaacagag
gaactagccaatcaaatcatcaaaaacatggtgttcattgctaaagtggccaaacttatc
tccacaaaagagagttctattgagccaggaattgtggcaaaaactaatggtgatgcaaag
agcaaaaagtgtctttcattgaaatggctctttaaaaaaatgattcgggaggccaaccat
gaagcagtgaatcaaacgaaaacgaccatcaagagatccagtgtgtttaagtgggtggcg
gctgtcagtatggacctggggcctacactgctgccctctgttgtccccatcatgatgcca
gccttacaaagggagaccaatgagaataacccaaatactgatccagctctcaaaagtctg
gcccaagaggttctagatatcctccggaagattctaggggttgaaacgtacacccagctt
tttgcaaaaacccacaaagagcagttcgatagaaaggaaaccaggaaaaggaaggaggct
gttgaggctgtttctaatcctcaacatgctgccaaaaggaaaatgaagaaaaatttggct
aaacgtgaggccaaaaagagaaagttagaggagttccgggtgtcaaagaaaattaagaaa
cggaaagtcaaagatatggctatcacttcttga
DBGET
integrated database retrieval system
