Crassostrea virginica (eastern oyster): 111104518
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Entry
111104518 CDS
T09197
Name
(RefSeq) CCR4-NOT transcription complex subunit 2-like isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111104518
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111104518
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111104518
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111104518
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
RE_LlaJI
Motif
Other DBs
NCBI-GeneID:
111104518
NCBI-ProteinID:
XP_022294223
UniProt:
A0A8B8AU70
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Position
7:13771924..13790434
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AA seq
580 aa
AA seq
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MIPDEQAMAFRNPLENTNMSSGIGQRFMTDQLSWNTQYGLGRKGTGELSPGSRKILGQQM
PPGQPNLAKQNILNLNLDDDGELDLGQGAMSNSSKVFRPDRDMMSQSPSQLGFGMSNFYT
QGGGSGLGANSGLGSNSGLGSNSGLGTNASMAGTFAALPQRGAVSGPQFRGNNSTPTSMN
LPYNLQQPQQQPSPSRNMISAIGGQRNVISQSQTSQSMSKLQNSGPMSSINNNFVFGQAN
RQSKFSVYNNPEQKFMNMLFGTDADQPGLDLSEFPTLGNRNLPSTPISNVRNYGQYLKVG
MVSKPVAETAPEFQIQQEDFPALPGAQSKGGRDPPSSISNDAARKTPTSASMTSTEQILK
DGKLSGDKANQAKRGIQTHADGMVSNIPSGMVTDQFGIAGLLTFLRAANENDHNLIALAP
GIDLTTLGLNLNSPENLYSTFQSPWVDLPCRPQDIDYHVPTEYLTNIFLRDKLAPIKLNR
YGEDVLFFLFYMNGNDFIQLAAAAELYTRDWRYHKEERVWITRAPGVEPTFKSAMYERGM
YYFFDVQNWRRVAKEFHLEYDKLEERPTLPNVMHHNASQQ
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgataccagacgagcaagcaatggcttttcgtaatcccctggaaaataccaacatgtcc
tcaggaataggacaaaggtttatgactgaccaattatcctggaacacccaatacggcttg
ggccggaaggggacgggggagctttccccggggtccagaaagattctgggtcaacagatg
ccccccgggcaacctaatttggccaagcagaatattctgaacttgaacttggacgacgat
ggagaactagatctgggacagggtgccatgtcaaattccagcaaagtgttccgaccagac
agagatatgatgtcacaatctccctcccaattgggctttgggatgtccaacttttatacc
caaggtggaggctcaggtctgggtgccaattcgggtctgggttcgaattctggtctgggt
tccaattcaggtctgggtacaaatgccagtatggcgggaacattcgcagccctacctcag
agaggggcagtgtctgggccccagttcaggggaaacaactccacaccgaccagtatgaac
ctaccgtataacctacagcaaccccagcagcagccctcacccagcagaaatatgatatct
gcgattggaggacagagaaatgtgatatcccagagtcagacgagtcagtccatgtccaaa
ttacaaaacagtggtccaatgtccagtattaacaacaactttgtatttggacaagccaac
cgccagagcaagttctccgtctacaacaatccagaacaaaagtttatgaatatgttattc
ggtacagatgctgaccagcccggtttagacttgtcggagttccctaccctgggaaacagg
aaccttccctccacgccaatctccaacgtcaggaactatggtcagtatctaaaagtgggt
atggtcagtaagcctgtggcagagacagcccccgagttccagatccaacaggaggatttc
cccgcactccctggggctcagagtaagggagggagggatccaccttcaagtatatcaaac
gatgcagcaaggaaaacaccaacaagtgcatcaatgacgtcaacggaacaaattttgaaa
gatgggaaactttcaggggacaaagctaaccaagcgaagagaggcattcagacacatgct
gatggaatggtgtccaatattccctctgggatggtgacagaccagttcggaatcgcggga
cttctgacatttctccgagcagccaatgaaaacgaccacaatctcatcgctttggcccca
ggaatagatctcacaacgttaggattaaatctcaattctccggaaaatttgtacagtact
tttcaatcaccgtgggttgatttaccatgtcgacctcaagatatcgattaccacgtccca
acagagtacctaactaacatcttcctcagagacaagttggcgccaatcaaactgaatcgg
tacggtgaggacgtcctgttctttctcttctacatgaacggcaatgacttcattcagtta
gcggcagcagcagaactgtacacacgagattggaggtatcacaaggaagaacgggtgtgg
atcacgcgcgccccaggggtggagcccacattcaagtcagccatgtatgagagagggatg
tactatttctttgatgtacagaactggagaagggtggcaaaagaattccatttggagtat
gataaactggaggagcggccaaccttacctaatgtgatgcaccataacgccagccagcag
tag
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