Crassostrea virginica (eastern oyster): 111104805
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Entry
111104805 CDS
T09197
Name
(RefSeq) TFIIH basal transcription factor complex helicase XPB subunit-like
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03022
Basal transcription factors
cvn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111104805
09124 Replication and repair
03420 Nucleotide excision repair
111104805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvn03021
]
111104805
03400 DNA repair and recombination proteins [BR:
cvn03400
]
111104805
Enzymes [BR:
cvn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
111104805
Transcription machinery [BR:
cvn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
111104805
DNA repair and recombination proteins [BR:
cvn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
111104805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
AAA_22
DUF3638
Motif
Other DBs
NCBI-GeneID:
111104805
NCBI-ProteinID:
XP_022294654
UniProt:
A0A8B8AWJ6
LinkDB
All DBs
Position
7:13753772..13764637
Genome browser
AA seq
778 aa
AA seq
DB search
MGKKDKRDREERRAKKSKVEYEEYVEEDTTEAEPTKEEIPDAATRSVDDTGKEDEFGAKD
YRTELELKPDHLSRPLFVAPNGHIFLESFSPVYKHAHDFLIAISEPVCRPEFIHEYKLTA
YSLYAAVSVGLETNDIIEYLRRLCKTSLPKGIEEFIKLCTLSYGKVKLVLKHNKYYVESQ
HPEVIQVLLKDPVIQECRYRTEETELLTGQVSSKSALQLAKPGPSTSAEGEAKQGETTGE
EVPDDIYAYYDKMDKEEDEEEDTKTVSFEVKQEKIEVIQKRCIELEYPLLAEYDFKNDTV
NPDINIDLKPSTVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKTLVGVTAACTVRKRAI
CLATSGVAVEQWKQQFKMWSTADDSIICRFTSDAKDKPIGSSILISTYSMLAHSTKRSWE
AEKVMEWMQSQEWGIMILDEVQTIPAKMFRRVLTIVNAHCKLGLTATLVREDDKIADLNF
LIGPKLYEANWMELQNNGYIARVQCAEVWCPMAPEFYREYLDTKSQKKLLLAVVNPNKFR
ACQFLIRYHERRNDKIIVFSDNVFALKSYAIKLNKPYLYGPTSQGERMQILQNFVHNPKV
NTIFVSKVADTSFDLPEANVLIQISAHGGSRRQEAQRMGRILRAKKGAVAEEYNAFFYSL
VSQDTMEMHFSLKRQRFLVNQGYAYKVITKLAGMEEENLAYSTKEEQAQLLQKVCAATEQ
DAEEERGVGEGGLQVSRKVGSMSSMSGADDSLYMEFKGKRSTLPAGHAHPLFKRFRKV
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atggggaagaaagacaaaagagatagggaggaaagacgagcaaagaaatcgaaggttgaa
tatgaggaatatgtagaggaagacactacagaagctgaacctaccaaagaggagattccc
gatgcagcgactcgctcggtggacgacaccgggaaagaagacgagttcggggccaaggac
taccggacagagctcgagctcaaaccggaccacctctcccggcccctgtttgtggctcca
aatggacacatcttcctggagtccttttcaccagtctacaaacacgcccatgatttcctg
attgccatctcagagccagtatgtcgccccgagtttatccatgagtacaagttgacagcc
tactcactgtatgcagcggtgtcagttggtctggagaccaatgacatcatagagtacctc
cgacgtctctgtaagacctctctacccaaaggaatcgaagagttcatcaagctgtgtacc
ctgagctatgggaaagtgaagcttgtgctgaaacacaacaaatactatgtggagagtcaa
cacccggaagtgattcaggttctgctgaaggatccagttatacaggagtgtagataccgg
acagaggagaccgagctgctcaccgggcaggtgtcatcaaagtcagctttacagctggca
aagcctggccccagtacctctgcagaaggggaggctaaacaaggggagacgactggggag
gaggtccctgacgatatctacgcctactacgataaaatggataaagaggaggacgaggag
gaggacaccaaaaccgtgtcatttgaggtcaaacaggagaaaatagaggtcatacagaaa
agatgcatagagttggagtatcccctgttggcagaatacgacttcaagaacgacacagtc
aaccccgacatcaacattgacctgaagccttccaccgtcctccgaccataccaggagaag
agtctcagaaagatgtttggcaacggtcgcgctcgctctggggtcatcgtcttaccctgt
ggtgctggtaagacattggtgggggtgactgcagcctgtacagtcagaaagagggccatc
tgtctggccacctcaggtgtggccgtggagcagtggaaacaacagtttaagatgtggtcc
acagcggatgacagcatcatatgtagatttacctcagatgccaaggataaaccaataggg
tcatctattctcatcagcacctactcaatgttggctcattcaaccaaacgttcttgggag
gcagaaaaagtcatggaatggatgcagagtcaggagtgggggatcatgattcttgatgag
gtgcagacaatcccagctaagatgtttcggcgagttctgacgatcgtgaatgcacattgt
aaactgggactgacggccactcttgtacgagaggatgacaaaattgctgatctcaacttc
cttatcggacccaagctctatgaggcaaactggatggaactgcagaacaatggctacatc
gccagggtgcaatgtgcagaggtgtggtgcccaatggctccagaattttaccgggaatac
ctggataccaagtcacagaaaaaactgctgttggctgtggtcaaccccaacaagttccga
gcctgtcagtttctgatacgatatcacgagcgacgaaatgataaaatcatcgttttctct
gacaacgtttttgccctgaaaagctatgctatcaagttgaacaagccatacctgtatgga
cccacatctcaaggggagagaatgcagattttgcagaattttgttcacaaccccaaagtc
aatactatatttgtgtccaaggtggcagacacgtcttttgatctccctgaggcgaacgtt
ttgatccagatctcggcccatggaggttcacgtagacaggaggcccaaagaatggggcga
attctcagggcaaaaaaaggagctgtagcggaagagtacaatgcctttttctactccctt
gtctcccaggacacgatggagatgcacttctcgctgaagagacagaggttcctggtcaat
cagggctacgcctacaaggtcatcactaagctggccggcatggaggaggagaatctggct
tacagcactaaggaggaacaagctcagctgctacagaaagtgtgtgccgccacagaacaa
gatgcggaggaggagcgcggcgtaggggagggaggattacaggtgagccgaaaggtaggc
agcatgagttccatgtcgggagcagatgacagcctctacatggaattcaaggggaagcga
tccaccctgccagcgggacatgcccatcctctgtttaaacgcttcaggaaagtgtga
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integrated database retrieval system
