Crassostrea virginica (eastern oyster): 111106001
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Entry
111106001 CDS
T09197
Name
(RefSeq) U3 small nucleolar RNA-interacting protein 2-like isoform X1
KO
K14793
ribosomal RNA-processing protein 9
Organism
cvn
Crassostrea virginica (eastern oyster)
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cvn03009
]
111106001
Ribosome biogenesis [BR:
cvn03009
]
Eukaryotic type
90S particles
Other 90S particles
111106001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_CAF1B_HIR1
WDR55
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_DCAF12
ANAPC4_WD40
Beta-prop_SPT8
Beta-prop_IFT140_1st
Beta-prop_WDR75_2nd
Beta-prop_WDR19_1st
WDR54
Beta-prop_RIG_1st
Gsf2
Motif
Other DBs
NCBI-GeneID:
111106001
NCBI-ProteinID:
XP_022296217
UniProt:
A0A8B8AYI9
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Position
8:complement(32539564..32550470)
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AA seq
468 aa
AA seq
DB search
MPFFIKSKRKQSKSKTKNQRPQVSLSGEPSKRKRKKLRLQNEEIESESEIESDDGNRKAD
VVTSSDEEETAQEKKLRLAKEYLSNLEQEEADKREEDEIHRDIISHRLKQDLLEQSGKLQ
KLVADEYEEPSLDDLIVLRGHQLSVTCTVISPDKRHVFSGSKDCSIIKWDAVGGRRLHTI
QGGRKGTEDTHTGHTDHVLCLAMSSDGKFLASGGRNKFVLLWNPDTCQLLHKFTGHRDAI
SGLAFRIGSHQLFSASHDRSVKIWNVDELAYIETLFGHSDAITGIDSLFRDRAITSGGRD
ASIRIWKVVEESQLVFNGDPGSIDCIAFINESNFVSGSDNNSLSVWSLMKKKPLVTVRNA
HQGHDQNGNSSPRTNWITAVAALHNTDLLASAGSKDGCIKLWKTSKNYTVLQPLFSIPMV
GFVNSLVFSVDGQTLVAGIGQEHKLGRWWRIKEAKNGTRIIKLKKKEA
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgccttttttcatcaagtctaaaaggaagcagtcaaagtccaagacaaaaaatcaaaga
ccccaagtttccctcagtggggagccatcaaaacgcaagaggaagaagctcaggctgcaa
aatgaagaaatagaaagcgaatcagaaatagagagtgatgatgggaatcggaaagctgat
gtcgtgacgtcatcagacgaagaagaaactgcccaggagaaaaaactacgacttgccaaa
gaatatctttctaacttagagcaagaagaggcagataaaagagaagaggatgaaattcac
agagacatcatatcacacagattaaagcaggacctgctggagcagagtggtaaactacag
aaactggtcgctgatgagtatgaggagccgtctttagacgacttaatcgtcctgcgtgga
caccagctgagtgtgacatgtacagttatctcccctgataaaaggcacgtgttcagtggc
tccaaagactgcagcatcatcaaatgggatgcggtgggggggaggagacttcacacgatc
cagggcgggaggaaggggacagaggacacccacacggggcacaccgaccacgtcctgtgt
ctcgccatgtcctccgacgggaaatttctggcttctggagggagaaacaagtttgttttg
ttatggaatcctgacacctgccaactcctccacaaattcacgggccacagggatgccatt
tctggtttggcctttagaattggcagccatcagttatttagtgcctcacatgaccgctca
gtaaagatctggaacgttgatgagctggcttatattgaaacattatttggacacagcgac
gctatcactggcattgacagtttgtttcgtgatcgagccatcacctccgggggacgtgac
gccagcatacggatctggaaagtggtggaggagtctcagctggtgttcaatggagacccg
ggatcaatagactgcatagccttcatcaacgaatccaactttgtctccggctctgacaac
aactccttgtcggtatggtcgctgatgaagaagaaaccgctggtgacggtgagaaacgcc
caccagggtcacgaccagaacgggaactccagtccccggaccaactggatcacggccgtg
gcggctctccacaacaccgacctcctggcctccgcaggttccaaagatggctgtattaag
ctgtggaagactagcaagaactacacagtgttacaacctctattttctatacctatggtg
ggctttgtgaacagtctggtcttctccgtagacggacaaactctggtggcaggcattggt
caggaacacaaactaggtcgctggtggaggatcaaagaggcaaaaaacggaaccagaatt
atcaaactcaaaaagaaagaggcgtga
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