Crassostrea virginica (eastern oyster): 111106677
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Entry
111106677 CDS
T09197
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cvn03016
]
111106677
Enzymes [BR:
cvn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
111106677
Transfer RNA biogenesis [BR:
cvn03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
111106677
Prokaryotic type
tRNA splicing ligases
111106677
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
111106677
NCBI-ProteinID:
XP_022297162
UniProt:
A0A8B8B174
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All DBs
Position
8:16176379..16188144
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AA seq
506 aa
AA seq
DB search
MVVRTYQDELKYLEKISNCCWRIKKGFVDNMNVEGVFYTNETLEKLMFDELKQSCRTQGY
GGFLPGMKQIGNVAALPGIVGKSIGLPDVHSGYGFAIGNMAAFDMSNKDSVVSPGGVGFD
INCGVRLLRTNLTEKDVAPLREQLAQCMFDHIPVGVGSKGIIPMTAQNLEEALEMGMDWS
LREGYAWAEDKEHCEEYGRMLQADPGKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDEIYN
KFAAKKMGIEFKGQVCVMIHCGSRGLGHQVATDSLVAMEKAMKRDNINVNDRQLACARIN
SPEGQDYLKGMAAAANYAWVNRSSMTFLCRQAFAKMFDSTPDDLDMFMIYDVSHNIAKVE
EHFVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTQQGM
EETYGTTCHGAGRALSRAKSRRNLDYTEVLSALEEKGISIRVASPKLVMEEAPESYKNVT
DVVDTCHLAGISRKAIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgtgagaacatatcaagacgagctaaagtatcttgagaaaattagtaattgttgt
tggagaataaagaaaggctttgtggacaacatgaatgtggaaggtgtattttacacaaat
gaaactctggaaaaactgatgtttgacgagttgaaacagtcctgtcggacacaaggatat
ggaggtttcctgccaggaatgaaacagattgggaatgttgcagcattgcctgggattgta
gggaaatccattggcctccccgatgttcattctggttatgggtttgccataggaaacatg
gctgcctttgacatgagtaacaaagactcagtggtctccccggggggcgtgggctttgac
attaactgtggcgtccgcctcctccggaccaacctcacggagaaggatgtggcgccgctc
agggagcagctggctcagtgtatgtttgaccacatccctgtgggggtggggtccaaagga
atcatccccatgactgcacaaaacctagaagaggctttggagatgggaatggattggtca
ttacgagaaggttatgcgtgggcggaggacaaggagcattgtgaggagtatgggaggatg
ctacaggctgacccagggaaggtcagcagtcgggccaagaaaagggggctaccccagttg
ggaactctgggagctgggaaccattatgcagagatacaggtggtggatgagatctacaac
aagtttgctgccaagaagatgggcatagagttcaagggtcaagtgtgtgtgatgattcat
tgtggcagcagaggactgggtcaccaggtggccacagattcattggttgctatggaaaag
gctatgaagcgggacaatatcaatgtaaatgaccggcagttggcctgtgctagaattaac
tcccctgaaggacaggactaccttaaaggcatggctgcagctgccaactacgcctgggtt
aatcgctcaagcatgacattcctctgtagacaggcttttgccaagatgtttgacagcaca
ccagatgaccttgacatgtttatgatttatgatgtgtcgcacaacattgcaaaggtggag
gaacattttgttgatgggaaacagaagacgttactggtccacagaaaaggctccacaagg
gcgttccctccccaccaccccctgatacctgttgattaccagctgacaggacaacctgtt
ttgattggaggaaccatgggaacgtgtagctatgtcctgacgggtacacagcagggtatg
gaggagacttacggtaccacatgccatggggcgggcagagcactatctcgagccaagtca
aggcgtaatctggactacacagaagtgctcagtgcattggaggagaaaggaatcagtatc
agagtggcctcccctaagctggtcatggaagaggcccctgaatcctacaaaaatgtaaca
gatgttgtggatacatgtcaccttgccggcatcagtcgtaaagccattaaacttcgtcca
atcgctgtcatcaagggctaa
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