Crassostrea virginica (eastern oyster): 111107565
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Entry
111107565 CDS
T09197
Name
(RefSeq) LOW QUALITY PROTEIN: host cell factor 1-like
KO
K14966
host cell factor 1
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03083
Polycomb repressive complex
cvn04980
Cobalamin transport and metabolism
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
111107565
09150 Organismal Systems
09154 Digestive system
04980 Cobalamin transport and metabolism
111107565
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cvn01009
]
111107565
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cvn03036
]
111107565
03029 Mitochondrial biogenesis [BR:
cvn03029
]
111107565
Protein phosphatases and associated proteins [BR:
cvn01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
111107565
Chromosome and associated proteins [BR:
cvn03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
NSL complex
111107565
HMT complexes
COMPASS/SET1 complex
111107565
MLL-HCF complex
111107565
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
111107565
Mitochondrial biogenesis [BR:
cvn03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
111107565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_3
Kelch_5
Kelch_4
Kelch_1
Kelch_6
fn3
Motif
Other DBs
NCBI-GeneID:
111107565
NCBI-ProteinID:
XP_022298534
UniProt:
A0A8B8B749
LinkDB
All DBs
Position
8:8604926..8619789
Genome browser
AA seq
1544 aa
AA seq
DB search
MAAPILKWKRVTNTTGPCPRPRHGHRAVAIKDLMVVFGGGNEGIVDELHVYNTATNQWFV
PAVRGDIPPGCAAYGFICDGTRILVFGGMVEYGKYSNELYELQASRWEWKRLKPKSCKNG
PPPCPRLGHSFTLLGNKAYLFGGLANDSEDPKNNIPRYLNDLYVLELKPHSNTLSWDFPA
TVGQPPPPRESHTCVGYAEKDGRRPRLIIYGGMSGCRLGDLWQLDIDTYTWIKPVIQGIP
PLPRSLHSANVIGHRMYVFGGWVPLVMDDVKVATHEKEWKCTNSLASLNIETMTWEPLAM
EVFEDSLPRARAGHCCVSIHTRLYIWSGRDGYRKAWNNQVCFKDLWFLETEKPPAPSRVQ
LVRASTNTLEVCWGAVPTADAYLLQLQKYDLPPSQALTPTAVPQTNPLMKAVPTPSTPQP
TVVRTPTPGVAQIRTNAGALGSSALASPQTIRVTAVTARQKTPITVNPGTIRVASPQIVT
LPQQRAMTGNQMSGIQALAAAAAATQKITGTTTTPSTSAIKVVTPTIVTPTGVKVTPIGN
QIVKSTTANPSTPTVRVATPGATILKSTPGAIQQTIGGKQIITVHKASTGGTSTSGQPQI
VTLVKTNQGMQVATTKGPLPQGATIVKLVTTQAGGTGKPTAIITTSQPGQTPSTILGISS
VQPQSSTTKTIIKTIPSSMLSMAKAGTSTSTTPGGAKTIVIAAPKGSTGGLTGTPHKIIT
SVPKIAGQGNTQFIVVSPQXSVGGAHTITSGGKPIQVTTLQTTSGVTIGGHQIVTASQVG
KPLVQQGAGGTIVKTIQAAPTTMAGSATSLLINTTAGSAXTQSTPTISLITQPSISQNPV
TLTTQSVSATPIQATASGKPVQITITPAAAQATTMQAQTTAAAAPAVSQPCTDGHNCPGD
ETPQPAVCTDGHNCPGDENPQPSNVCTDGHNCPGDENPQPAVCTDGHNCPGDENPQPSNV
CTDGHNCPGDEVDGVPPAAKGQCTDGHNCPGDENAQSSNVCTDGHNCPGDENAAQSSNVC
TDGHNCPGDENPPQSNVCTDGHNCPGDENPSSSNVCTDGHNCPGDENPQPAVCTDGHNCP
GDENPPQSNVCTDGHNCPGDENQTSSTGQQESSGLPDTAAVVAPRCHSTQMLQFLSEQVP
AILMQDADPKQEXEDMETAPTETAPQDATAAATTAIAPQEIAXKPEVAAPQETPASDSSS
VASGDVAPVVPKQEEPMDIGPTTPVATLQGGVISVGPPPVVAQPSQSVDTSVADSDPLAT
LASAAISSGSAQPTIKQEPGLVAANGIKQEVQDKPDVLPKTPTTPIKKEGNQWYDVGIIK
GTSCVVSHFYLSTDALQTGGNGNCGQCGDVNILKKQELLPGTAYKFRVAGINACGRGAFS
EISAFKTCLPGYPGXPSAIKISKSTEGAHLSWEPPQNTAGKIPNTRLLGRSNAAAHVDQK
PGAPAQLAFXRVYCGPAPTCTVTAASLASAHIDYTTKPAIIFRIAARNEKGYGPATQVRW
LQDAQSPAAQKVAVKRTVAGDGAQLVGAGQIKKLKTDDENEKPM
NT seq
4635 nt
NT seq
+upstream
nt +downstream
nt
atggcggctcccattctgaagtggaagcgggttaccaatactacaggaccctgtccgcgg
cctagacatggacacagagcagttgctatcaaagatttgatggtcgtttttggtggtgga
aacgaaggaatcgttgatgagcttcatgtttacaacacagccaccaaccagtggtttgta
ccagcagtacggggagatattcccccaggatgtgccgcttatggcttcatttgcgatgga
acgcgaatcctggttttcggaggaatggtggagtatgggaaatattccaatgaattgtac
gagttacaggctagtcgctgggaatggaagagactaaagcccaaatcctgcaaaaatgga
ccacccccatgcccaagattgggtcacagttttaccttgctcggaaataaagcatatttg
tttggaggtctagctaatgacagtgaagatcccaaaaataacataccaagatatcttaat
gacctttatgtattggaactgaagcctcactctaacactctgtcgtgggacttcccagca
accgttgggcagccccctcccccacgcgaatcacacacctgtgtagggtatgctgagaaa
gacggcagacggcccaggctcattatctacggcgggatgagcggctgccgactgggcgac
ctgtggcagttagacattgacacatacacctggataaaacctgtcatacagggcattcca
cctctacccagaagtctccactctgcaaacgttatcggccatcgtatgtacgtatttggg
ggttgggttcctttggtgatggatgatgtgaaagtggccacgcatgagaaagaatggaag
tgtaccaactcactggcttcattaaatattgaaacgatgacctgggaacccctggctatg
gaagtttttgaggattccctccctagagcccgggcagggcactgctgtgtgtccattcac
acccgcctgtacatctggagcggtcgagatggctacagaaaggcttggaacaaccaggtg
tgctttaaagacctgtggtttcttgaaacagagaagccccccgctccctccagagtacag
ttggtccgtgccagcaccaacaccctggaggtctgctggggagcagtgcccacggcggat
gcctatctcctccaactccagaaatacgacctgcccccctcccaggccctcacccccacg
gctgtaccccagacaaaccccctgatgaaggcagtgcccacccccagcaccccacagccc
acagttgttagaacgcccactccaggagttgcccagattcgaactaatgctggagcctta
ggctcctctgccctggcgtcgccacaaacaatcagagtgactgcagtaacggccagacag
aagacccccatcacggtcaaccccgggaccatcagagtggcctcccctcagattgtgacc
ctgccccagcagcgagccatgactggaaatcagatgtctggaatccaggctttagccgcc
gcagctgccgccacacagaaaatcaccggaaccacaaccaccccctccacctccgccatc
aaagtggtgacccctaccattgtgacccctacaggggtgaaggtcacaccaattggtaac
cagatagtcaaaagtaccacagctaacccttcaacccccacagtacgagtggctacccca
ggggccaccattctgaagtccacccccggggccattcagcagaccatcggagggaaacag
atcatcacggtgcacaaggccagcacgggagggacctccacctccggtcagccacagata
gtgacgctggtcaagactaaccagggcatgcaggtggccacgacgaagggacccctgcca
cagggagctaccattgtgaagctggtaaccactcaggcaggtggtactggtaaacccacc
gccatcatcaccaccagccagccaggacagacgccatctaccattctcggaatcagcagt
gtgcaaccacagtcatcgacaacaaaaaccatcatcaaaacaattccatcatccatgctg
tccatggccaaggcaggaaccagtacctccaccactccagggggtgccaaaaccattgta
atcgccgcacccaaaggcagcactgggggactcacagggaccccccacaagatcatcacc
tcggtccccaagatcgcggggcagggaaacacccagttcatcgtggtcagtccccaangc
agtgtgggaggggcccatacaatcacatcaggtgggaagcccatccaagtaacgactcta
cagaccacatcaggcgtgactataggggggcaccagattgtcacggcctcgcaagtcggc
aaaccactagtgcagcaaggagctggagggacaattgtaaaaacaattcaagccgctccc
acaacaatggcaggatccgccacatctcttctcatcaacaccacagctggatctgccncg
acacaatccacacccacaatatccctcatcacgcaaccctccatctctcagaaccctgtc
actctgaccacacagtccgtgtcggccacccccatccaagccactgctagtggcaaacca
gtacagattaccattacgccggcggcagcacaggcaaccacgatgcaagcacaaaccact
gctgctgcagccccagcagtatctcagccttgtacagacggacacaattgtccaggagac
gagaccccacaacctgcagtctgcacggatgggcataattgtcctggagatgagaatccg
cagccatccaatgtctgtacggatgggcacaattgtccaggggatgagaatccacagcca
gcagtgtgcacagatggacataactgtcctggagatgaaaatcctcagccatccaatgtt
tgcaccgatgggcacaactgcccaggggacgaggttgatggtgttcccccagcagcaaaa
ggacagtgcacagatgggcacaattgtccaggcgatgagaatgcccagtcctcaaatgtt
tgcacagatgggcacaattgcccaggggatgaaaatgcagcacagtcttctaatgtctgc
acagatgggcacaactgcccaggtgatgaaaatccaccacaatccaatgtttgcaccgac
gggcacaactgcccaggtgatgaaaatccatcatcatctaatgtttgcactgatgggcac
aactgcccaggggatgaaaatccacagccggcagtgtgcacagatggacacaactgtcca
ggggatgaaaacccaccacaatccaatgtgtgcacagatgggcacaattgccccggggat
gaaaaccaaacttcatctacaggtcagcaggagagttcgggcctaccagatacagctgct
gtagtagcccctcggtgccactcaactcaaatgctgcagttcctctcggaacaagtgcca
gcaatcttgatgcaggacgcggatcccaaacaggaangcgaggacatggaaacagcaccc
acggaaaccgcaccacaagatgccacagctgctgccacaaccgcaatagcaccacaggaa
attgccnggaaacccgaagtggcagcaccgcaggaaactcctgcatccgactcctcctca
gtggcttcaggagacgtggctcccgttgttccgaagcaggaagaacccatggacatcggt
cccacgacaccggtggctaccctgcagggtggagtgatcagtgtcggacccccaccagtt
gtagcccagccctcacagtccgtggacacatctgtagcagactcagaccccctagccact
ctggcttcagcagctatatcctcggggtctgctcagccaaccatcaaacaagagcctggc
cttgtagcagctaatggaatcaaacaagaggtgcaggacaaaccagacgttcttccaaaa
acacccactacgcccattaagaaggaagggaaccagtggtacgatgtgggcattatcaag
ggcacttcctgtgtcgtctcccatttctacctgtccacagatgcactccagaccggcgga
aatggaaattgtggtcaatgtggagatgtgaacatcctgaagaaacaggaactcctgcca
ggcaccgcctacaaattccgggtggccggaatcaatgcctgtgggcggggggctttcagt
gaaatctctgccttcaaaacctgcctccctggctatcccgggnccccctccgccattaag
atcagcaagagcacggaaggagctcatctgtcgtgggaacccccacaaaacaccgctgga
aaaataccgaatactcgtctacttggccgttcgaacgcagctgcccacgtggatcagaag
cccggagcgccagcccagttggcttttngtcgggtgtactgcggcccagctcccacatgc
actgtgacagcagccagtctcgcttcagcgcacattgattacacgacaaagccggccatc
atcttccgaattgctgcccgtaatgagaagggctatggtccagcaacccaagtcaggtgg
cttcaggatgctcagagccctgcagctcagaaagtggccgtcaaaagaacagtggcaggg
gatggagctcagttggttggagcaggtcagatcaaaaagctgaaaactgatgacgaaaac
gaaaaaccaatgtaa
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integrated database retrieval system
