Crassostrea virginica (eastern oyster): 111107584
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Entry
111107584 CDS
T09197
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX54-like
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cvn03009
]
111107584
Enzymes [BR:
cvn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111107584
Ribosome biogenesis [BR:
cvn03009
]
Eukaryotic type
Pre-60S particles
Helicases
111107584
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DBP10CT
Motif
Other DBs
NCBI-GeneID:
111107584
NCBI-ProteinID:
XP_022298563
UniProt:
A0A8B8B630
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Position
1:complement(43106490..43120443)
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AA seq
834 aa
AA seq
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MTKWKRNRSKITENTDKNRYLQAKKGGIGSCQSKKADSISTRDEESDDSDSSQELQDTRK
WLTEQNRKKKKSGGFQSMGLSHSVYKGVMRKGYKIPTPIQRKTVPLIMEGKDVVAMARTG
SGKTAAFLIPMFEKLKTHTAKSGARALILSPTRELALQTLKFTKELGKYTGLRAAVVLGG
DKMDDQFAALHENPDVIIATPGRLMHVLVEMEMKLKSVEYVVFDEADRLFEMGFQEQLNE
IIHRIPESRQTVLFSATLPKLLVEFAKAGLHDPTLLRLDVETKLSEQLKQSFFRCREEDK
PAILLYLLKYVINPGQQSVVFAATKHHVEYLHMILSYAGIDSTYIYSSLDPXARKINVAK
FQHKKVKVLIVTDLAARGIDIPLLDNVINVNFPAKSKLFVHRVGRVARAGREGXAFSLVA
QDEVPFLIDLFVFLGKSLTIASQRKNLEDKDEVLGDVPQMVIDEMEDLLRLWHADHIDLV
SMKKVVGNAQKKYLRSRPLPAKESIKRYKQIQSADKIAIHPVFASEYSSEERERNDLLSA
LKSYKGHSTIFETNTSIKNKSFDVMKXKRAFHQTAIQKRSEQTSDAKESEADDSDMEDAK
QPMADEENLQEAFHTVIGGKRKASNKVFNPERKKKRKKENVRDEENYLHYRPKDFQSELG
LSLGTSFDKEASGAILDLRDDINKSKPTSHMKWDRKKKKFVSTNEQAAXKKKIRTESGAL
ISSSYKSRAYKDWLSKNKMAAGDQSGDEEEDAKINVSSQDNSHRLKVIGTKKRNWHTQLK
EENDMKRKSSEXKRKEEILKQRKIKEKKQAYQKHRQKQXQGRRNFKSQMSRKKR
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgactaaatggaaaaggaatcgatcgaaaataacggagaatactgataaaaacagatac
ctgcaagcaaaaaaaggaggaattggaagttgtcagtcaaaaaaagcagactcaatttct
acacgggatgaagaaagtgatgactcagattcaagccaagaacttcaggacacaagaaaa
tggttgacagaacaaaacaggaagaagaaaaaatctggaggatttcagtcaatgggttta
tctcactctgtttacaaaggggtcatgaggaaaggatataaaatacccactcccatacag
agaaagactgtcccattaattatggaaggaaaagatgttgttgctatggcaaggacagga
agtggaaaaacagcagcatttctgatcccaatgttcgaaaaactcaaaactcacactgca
aagtctggagcccgagcccttatattatctcctactcgagaattagcactacagactctg
aaatttactaaagagcttgggaagtatactggtttgagagctgctgtggttttaggggga
gataagatggatgaccaatttgcagcacttcatgaaaacccagatgtaatcatagccacc
cctggtcgtctgatgcatgttttggtggagatggaaatgaagctcaaatctgtggagtac
gtcgtctttgacgaagcagacaggttatttgagatgggctttcaggaacagttgaatgaa
ataatccacagaattccagaatccagacagactgttttattctcagccactcttccaaaa
ctactggtagagtttgccaaagctggacttcatgaccctactcttctaagattagatgta
gagaccaaactcagtgagcagcttaagcaatcattctttcgctgtcgtgaagaggacaaa
cctgcaatattgttatacttactcaagtatgtcatcaatccgggtcagcagtctgttgtt
tttgctgcaactaaacatcacgtggaatatctacacatgattttgtcctatgctggaata
gattcgacgtacatatacagctccctagatccangcgctcgtaaaatcaatgtggcaaag
tttcagcacaaaaaggtcaaggtcttgattgtgactgatctggctgcccgtggtattgac
attccactgctggacaatgtcatcaacgtcaatttcccagccaagtccaagctctttgtg
cacagagtgggtcgagtggcccgagctggcagggaggggntcgcattttctttggtggca
caggacgaagttccttttctcatagacttgttcgtctttcttgggaaatctcttacaatt
gcctcacaacgtaaaaacttggaagataaggatgaggtgttgggtgatgttcctcaaatg
gttatagatgaaatggaggacttattgagactctggcatgctgaccatattgatcttgtc
agtatgaagaaggttgttggaaatgctcagaagaaatacctgagatcgcgacccctgccg
gccaaagagtccatcaaacgctacaaacagatccagtccgcagacaaaatagcaattcac
ccagtgtttgcttctgagtacagctcagaggaacgtgagaggaatgatttgttgagtgct
ctgaagtcatacaaagggcactcgaccatttttgagacaaatacatcaatcaagaacaaa
agctttgatgtgatgaagncaaaaagggccttccatcagacagccatccagaagaggagc
gagcagacgtcagatgccaaggaatcagaagcagacgacagtgacatggaggatgcaaag
caaccaatggcagatgaggaaaatcttcaggaagcttttcacacagtcattggaggtaaa
cggaaagccagtaataaagtgttcaatcctgagagaaaaaagaaacgcaaaaaggagaat
gtacgagatgaggagaattacctacattaccgcccgaaagacttccagtccgaactaggg
ttaagccttggaacatcgtttgacaaagaagcatcaggagccatattagatttacgagac
gatatcaataaatccaaaccaacatctcacatgaagtgggacagaaaaaagaagaagttt
gtcagcacaaatgaacaggcagccnaaaagaaaaagatccgtacggaaagtggagctttg
atatcgtcctcctacaagtctcgtgcttacaaagactggttaagcaaaaacaaaatggcc
gcaggggaccaaagtggagatgaggaggaggatgccaaaattaatgtcagcagccaagac
aacagccacaggttaaaggtcattggaaccaagaaaagaaactggcatacacaactcaag
gaggaaaatgatatgaaaaggaaaagttcagaanctaagcgaaaagaggaaattctaaaa
caacggaaaataaaagaaaagaaacaggcataccagaaacaccggcaaaaacagnaacaa
ggtcgacggaacttcaaatcccagatgtccagaaagaagcgctga
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