Crassostrea virginica (eastern oyster): 111107814
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Entry
111107814 CDS
T09197
Name
(RefSeq) LOW QUALITY PROTEIN: protein NEDD1-like
KO
K16547
protein NEDD1
Organism
cvn
Crassostrea virginica (eastern oyster)
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cvn03036
]
111107814
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
cvn04812
]
111107814
Chromosome and associated proteins [BR:
cvn03036
]
Eukaryotic type
Centrosome formation proteins
Pericentriolar materials (PCM)
Other PCM proteins
111107814
Microtubules and associated factors
gamma-tubulin ring complex
111107814
Cytoskeleton proteins [BR:
cvn04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Gamma-tubulin complex components
111107814
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
WD40
WD40_RFWD3
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_EML
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_HPS5
Beta-prop_TEP1_C
Beta-prop_Vps41
Beta-prop_DCAF12
Beta-prop_VPS8
Beta-prop_IFT140_1st
Beta-prop_DCAF4
Beta-prop_SPT8
WDR90_beta-prop_4th
Beta-prop_WDR35_TULP_N
WD40_MABP1-WDR62_1st
NBCH_WD40
PEP5_VPS11_N
WD40_like
WD_LRWD1
Beta-prop_IP5PC_F
Beta-prop_WDR75_2nd
Beta-prop_IFT122_1st
PROPPIN
Beta-prop_LRRK2
Beta-prop_IFT140_2nd
Beta-prop_WDR75_1st
Beta-prop_RIG_1st
VPS8_N
Beta-prop_NWD2_C
PAN2_N
Beta-prop_WDR19_2nd
B-prop_COPA_B_2nd
Motif
Other DBs
NCBI-GeneID:
111107814
NCBI-ProteinID:
XP_022298883
UniProt:
A0A8B8B6Y2
LinkDB
All DBs
Position
8:60238656..60251398
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AA seq
682 aa
AA seq
DB search
MSLGQLASAGDDIKLWDESNFSFLKQYNPHDQNIADICWSHDNAFLASVALNSEKIAIYS
CKTSAFPITTLDCTSGRLCLDLTSTSRYLVVGGSDGIIXAWDLKSKTIKKSYKDHKGPVS
CVLFNANDSHIASGSESGEIIVYNVVTGQGCRPMTAPKVQAIRQLQFNAVKKSXLGSASE
DGAVNLWDINTRRLLHSYSSAHXASATGLKFSPLNDILLLTVGLDKRIICFDVQSKKQVK
SIAVESPLTSIDVKSDGVTVAVGSTRGKVFVYDLRKATAPINVFNAHRASVQRLKFEHRS
TTEFQSLSKQEAYAMKAKLAQGDGEGLSPGRRQLPSAPNDQIRDHILKEVESWPISTFLE
YLEFDSSGDETEQPNASPSLTERKDQYSYRSIKSPNHSDGVFSPMREHTDSYGSSAMSPL
ENMNRQSVGTMGISSITPLRSEINSLKNLNGSMGLSPVSGPYTGSPENLRGESTVQPPVE
NHESENPGFPESHPAPSLHTDLDTQRLSAFTRRSGDGRILPPSSFTQPVSDYSASPEVTP
FSDSINRSRNTSSVRQRDHYDESPSASSGGSSVPPPFKLTTSPEGAQSVPSMDVPRPSQS
AGAQNRQNFQTQVIRNLISEELEDFKDQIHRDXVQLQVEMLRQFQIQMVEMTNVFKQHSV
NRDLLLEVERLREENKRLKKNF
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgagtttaggacaattagcttcagccggtgacgacataaaattgtgggatgaatcaaat
ttttcatttttaaaacaatacaaccctcatgatcaaaacattgcagatatttgttggagc
catgacaatgcatttctagccagtgttgctctgaacagtgaaaagatcgctatttattct
tgcaagacatcagcatttcccataacaacacttgattgcacatctggaagattgtgcctg
gacttgacatcaacatccaggtatctggttgtgggaggctcggatgggatcatcnatgca
tgggacctcaagtcaaaaaccatcaaaaaatcttacaaggatcacaagggtccagtaagc
tgtgtgcttttcaatgccaatgactctcacattgcttcaggatctgagtcaggggagata
atcgtgtacaatgtggtgacaggacaggggtgtcggccaatgactgctcctaaagtccag
gccattagacagctgcagttcaatgcagtcaagaagtccnctttggggtctgcctcagag
gacggggcggtaaacctgtgggacatcaacacgcggcgtctcttgcatagttacagctcc
gcccacnatgcctccgccaccggactcaagttctctcccctgaatgacatcttactgctg
actgtgggcctggacaaaagaatcatttgttttgatgttcagagcaaaaagcaggttaag
agcatagctgtggagtctcctctgacatccattgatgtgaagtctgacggggtgacggtg
gcagtgggctccaccagaggcaaggtgtttgtgtacgacttgaggaaagccacagctccc
atcaatgtcttcaatgctcatagagcctccgtgcagcgactcaagtttgaacacagatct
acgactgaatttcagagcttaagtaagcaggaagcctatgcaatgaaagccaagcttgcc
caaggggatggggaggggctttctccggggcggcgacagctcccctctgccccgaacgac
cagatcagggaccatattctaaaagaggtcgaatcatggcccatctccacatttttagaa
tatctagaatttgatagttctggtgacgaaacagaacagccaaatgccagtccatccctg
acagagagaaaagatcagtactcctacaggagcatcaagtcaccaaaccatagtgatgga
gtgttttctccaatgagagagcatacagattcatatggaagcagtgcaatgtcaccattg
gagaatatgaacagacaatcagtaggaaccatgggaataagcagtattacaccactcaga
tccgaaatcaacagtctcaaaaacctcaatgggagtatgggtttatctcctgtgtcaggg
ccatacaccgggtccccggagaatctcaggggagagtccaccgtccaaccacctgtcgaa
aaccacgagtcagagaatccaggattcccagaatctcaccccgctcctagcctccacact
gatctagatacccagagactttccgccttcacccggaggagtggggacggtcggatcctc
cccccaagttccttcacacagccagtcagcgactacagtgccagtcccgaggtcacaccc
ttcagtgattctataaatagatcaaggaacactagcagcgtgcgccagagagaccattac
gatgaatctcccagtgccagttcgggaggtagcagtgttcctcctccgtttaaactgact
acttcccccgagggggctcagagtgtcccctccatggacgttccccgaccctcacagagt
gccggggcacagaacaggcagaactttcagacgcaagtcatacgcaatctcatcagtgaa
gagttggaagatttcaaggaccagattcacagagacnatgtgcagttacaggtggagatg
cttaggcagttccagatacaaatggtggaaatgacgaatgtttttaagcagcactctgtg
aaccgtgaccttcttctggaagtagaacgactgagggaggaaaacaaacgcttaaagaaa
aacttctga
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