Crassostrea virginica (eastern oyster): 111108043
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Entry
111108043 CDS
T09197
Name
(RefSeq) regulator of nonsense transcripts 2-like isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03013
Nucleocytoplasmic transport
cvn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111108043
03015 mRNA surveillance pathway
111108043
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111108043
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111108043
mRNA cycle factors
P-body specific factors
111108043
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
111108043
NCBI-ProteinID:
XP_022299238
UniProt:
A0A8B8B934
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Position
8:26800815..26823451
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AA seq
1368 aa
AA seq
DB search
MSDSQGSGEKGPASKSRGPEKSASSGGAPRGSDRPSSGKPRPDSSRRYDDRPQKSPYKTS
TSSPSKGNNSAFDIKKGGSKSQTDSGYGERGGNSKRGGDSRSSGSARGDKWSQRGEKEGS
KPLPKGTAVDKSGRKIGKEERASDERGDKREEKKPSKEVKSASELEEQWQTEDEKKRKAE
EEAKRIEEERIKKEEEEQRRKEEEQKRLLEEEIKTVKDYQQECLEKYETKKKLREQNQEA
AENRPDESFFSRLDSNLKKNTAFVKKLKNLTESQKESLTKDFNGLNLNKYIGEAAAAITE
AKLKMSDIACGVHVCCLFYQRYGEFSNYLMDNWQKYLLSKKDEKINNPSKYRVDLRFFAE
LLSVGLFGLREGLNVLAGQLSLLTVGDKEEHNNLTILTSFCRHCGDDYAGLLPRKIRLLA
EKHGVEIPRSTLLPPERQKGCRNLLGDYYQSLCKHLLTDHKELKNIERQNRRILQTKGEL
SAERKEKFDAMLQAYQKLLSNTAIFADLLDEDLPELPEDEIKRDDDTGFDIFNPETSAEF
QYTGDATLFEDEDARSFYETLPDLKAFIPGICYKDSEQAAAKEDSKDDLSCLDEDMENLQ
IEDVEREMETEKQIAEVESKEAEQQEQEEVLQDYGMLPDADEEDADTGSLMKMQYEAYIQ
TLPNCVNKDLIDKAAVEFCMNFNTKSNRKKLVRALFTVHRTRYDLLPFYSRFVATLYPCM
PDVAGDLVQLLKGDFKWHVRKKDQINIESKLKTVRFIGELVKFKLFPKSEALHCLKMLMF
DFSHHNIEMACSLLDTCGRFLYRSQDSHHRTKIYLDVMMRKKSALHLESRYTTMIENAFY
YSNPPETQQSAQKVRPPMHEYIRKLLYKDLSKVTTEKVLRQMRRLPWDDPEIAFYATKCL
IAVWNVRYNSIHCAANLLAGLAPYHEHIAIQVVDGVLEDIRLGMEVNHPKYNQRRVSCVK
YLGELYNYRMLESAVVFKTLYSFITFGVMMDAEGGASPLDPPEHLFRIRLVCVLLETCGT
YFDKGSSKKKLDCFLAYFQRYYWFKRSNAIYTEARPFPVDVENLMIDTMECVRPKMKLHP
NYEEACKAVEELENEYKQKVASVLTIIETDQEGSASETDEGLGTIQEGEEYGEDLSLSGV
DESETSQEDTSQRSMEDQGEDEEEGGGSNEEEEEDVMESAGENEEEDQLTIMKGGPKHIK
CSEDEDFMTAFDKMMTENIQARTNESLKVPQLDIAVPMNLKDKNKKTVSVHLYPMKEEEP
PKIEDRSIEFVLMTRRGNKQHFTNLNVPISEEFATKYREREQAEKAEKEKMKQVVLGIHE
RQEEEDYQEMIASLNRVMPVNTNRERRVRYQHPKGAPDADLIFGSKKR
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atgagtgattcccagggttccggagagaaaggtcctgccagcaagtcacggggacctgag
aaatctgcctccagtggaggggcaccacgggggtcagacagaccatcctcaggaaagcct
cggccagattcctccagacggtatgacgatagaccccaaaagtccccatacaaaacttcc
acctcatcaccctcaaagggaaacaattctgcatttgatatcaaaaaaggaggaagcaaa
agtcagactgactcgggatacggtgagaggggaggaaactctaaaaggggaggtgactct
agatcaagtggtagtgcaaggggagacaaatggtcacagagaggagagaaagaaggctcc
aaaccactgccaaagggaactgctgtagacaagagtggaaggaaaattgggaaggaggag
agggcttcagatgaaaggggagacaaacgggaggagaagaaaccatccaaagaagtcaag
tcggcctcagagttagaggagcagtggcagactgaggacgaaaagaagaggaaggcagag
gaggaggccaagaggatcgaagaggagaggatcaagaaggaggaagaggagcagaggagg
aaagaagaagagcagaaaagactgctggaggaggaaattaaaactgtgaaggattaccaa
caggagtgcctggagaagtacgagaccaagaagaagttacgggaacagaaccaagaggca
gcagaaaatcgaccggatgagtccttcttcagtaggttggactccaaccttaagaagaac
actgcctttgtgaagaaactgaaaaatctaacagaatcccagaaggaaagcttaactaag
gacttcaatggactgaacctcaacaaatacattggggaagcggcggcagccattactgag
gccaagcttaagatgtcagacatagcgtgtggggtacacgtctgttgtctgttctaccag
aggtatggcgagttctccaactacctgatggacaactggcagaagtacctgctcagcaag
aaggatgaaaagataaacaaccccagcaagtaccgggtggacctgcgcttctttgcggag
ctgctgtcggtggggctgttcggcctgagggaggggctgaatgtcctggccggtcagctg
agcctcctgacggtcggcgacaaggaggaacacaacaacctgaccatcctgaccagcttc
tgtcggcactgcggggacgactacgccgggctgctgccccgcaaaatcagactgttggca
gaaaaacatggagtcgaaattccacggagcacattacttccgccggagagacagaaggga
tgtcgtaacttgttgggcgattactatcagtccctgtgtaagcatctactgactgaccac
aaggaactcaagaacatcgagagacaaaacaggcgcattctacagaccaaaggggagcta
agcgcggagaggaaggagaagtttgacgccatgttacaggcctaccaaaaactcctctcc
aacaccgccatctttgctgatctgttggatgaagatctacctgagctaccagaagatgaa
atcaagagagacgatgacacaggtttcgacattttcaatccagaaacaagtgcagagttc
cagtatacaggggacgcgactctgtttgaagacgaggatgctcggtccttctacgagact
ctgcccgacctaaaagccttcatcccagggatctgttataaggacagtgaacaggcagca
gccaaagaggacagcaaggacgacctgtcttgtctggatgaagacatggagaacctacag
atagaagatgtggagagggagatggaaacagagaagcagattgctgaggtggagagcaaa
gaggccgagcagcaggaacaggaagaggtgctgcaggattatgggatgcttcctgatgct
gatgaggaggatgcagatactgggagtttgatgaagatgcagtatgaagcctacatccag
acattaccaaactgtgtaaacaaagacctcattgacaaggcagcagtggagttttgtatg
aactttaacacaaagagcaacaggaagaagttggtgagggctctgttcacggtccatcgc
accaggtacgacctactgccgttttactcccgtttcgtggccacactgtacccgtgtatg
cctgatgtggcaggggacctggtgcagctcctcaaaggagacttcaaatggcatgtacgc
aagaaggaccaaatcaatattgagtccaagttgaagactgtcaggtttataggggaactt
gtcaagtttaagctgtttcccaagtctgaggctctccactgcttgaagatgttgatgttt
gacttttctcaccacaacattgagatggcatgttccttactggacacttgtggacgcttc
ctctacagatcccaggactcccaccacaggaccaaaatctacctggacgtgatgatgagg
aagaagtcggccctacacctggagagccgctacaccaccatgatagagaacgccttctac
tacagcaaccccccggagacccagcagtccgcccagaaggtccggccccccatgcacgag
tacatccgtaaactgctgtacaaggacctgtctaaagtcaccacggagaaggttttgcga
cagatgaggcggctgccctgggatgatccagagattgcattctatgccaccaagtgtctg
atagcggtctggaacgttcgctacaactccattcactgtgctgcgaacctcttggctggg
ctggctccctatcatgaacatattgccatccaggtggtggatggggttctggaagatatc
agactgggaatggaggtgaaccaccctaagtacaaccagcgacgagttagctgtgtgaag
tacctgggggagctgtataactaccgaatgctggagtccgccgtcgtcttcaaaaccctc
tactccttcatcacctttggtgtcatgatggacgcagagggaggggcctcccccctggat
ccccccgagcacctgttcaggatccgcctggtctgtgtactcctggagacctgtggtacc
tactttgacaaaggatccagtaaaaagaaactagactgcttcctcgcctatttccagcgg
tactactggttcaagagaagcaatgcgatctacacggaggcccgcccctttccagtggac
gtggagaatctaatgattgacaccatggagtgtgtccgccccaaaatgaagctccaccca
aactacgaggaggcgtgtaaagccgtggaggaactagaaaacgagtacaaacagaaagtg
gcctcggtgttgaccatcatcgagacagaccaggagggtagtgctagtgaaactgacgag
ggactggggacaatccaggagggcgaggaatacggagaggatctaagcttgagtggagtg
gatgagagtgagacaagtcaggaggacacgagccagaggagtatggaggatcagggtgaa
gatgaggaggagggaggaggcagtaatgaggaagaggaggaggatgtgatggagagtgct
ggggagaacgaagaggaggaccagttgacaatcatgaagggagggcctaaacacatcaag
tgtagcgaggatgaagacttcatgacggcttttgataagatgatgacagagaacattcag
gccaggaccaatgaatccctgaaggtaccccagctagacattgctgtccccatgaacctg
aaggacaaaaacaaaaaaacagtgagcgttcatctgtaccccatgaaggaggaggagccc
ccgaagatagaggacaggtccatagagtttgtgttgatgaccagacgaggaaataaacaa
catttcacaaatttgaatgtaccaatatcggaggagtttgccacaaagtacagggagcga
gaacaggcagaaaaagctgagaaggagaaaatgaagcaagtggtccttggaatccatgaa
agacaagaagaggaagattaccaagagatgatagcctccctgaatcgtgtgatgcccgtg
aacacgaaccgagagaggagggtaaggtaccagcaccctaagggagccccggacgctgac
ctcatctttggatccaaaaaaagatga
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