Crassostrea virginica (eastern oyster): 111108106
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Entry
111108106 CDS
T09197
Name
(RefSeq) regulator of nonsense transcripts 2-like isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03013
Nucleocytoplasmic transport
cvn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111108106
03015 mRNA surveillance pathway
111108106
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111108106
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111108106
mRNA cycle factors
P-body specific factors
111108106
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
111108106
NCBI-ProteinID:
XP_022299382
UniProt:
A0A8B8B7I7
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Position
8:complement(23014462..23043203)
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AA seq
1369 aa
AA seq
DB search
MSDSQGSGEKGPASKSRGPEKSASSGGAPRGSDRPSSGKPRPDSSRRYDDRPQKSPYKTS
TSSPSKGNNSAFDIKKGGSKSQTDSGYGERGGNSKRGGDSRSSGGARGDKWSQRGEKEGS
KPLPKGTAVDKSGRKIGKEERASDERGDKREEKKPSKEVKSASELEEQWQTEDEKKRMAE
EEAKRIEEERIKKEEEEQRRKEEEQKRLLEEEIKTVKDYQQECLEKYETKKKLREQNQEA
AENRPDESFFSRLDSNLKKNTAFVKKLKNLTESQKESLTKDFNGLNLNKYIGEAAAAITE
AKLKMSDLACGVHVCCLFYQRYGEFSNYLMDNWQKYLLSKKDEKINNPSKYRVDLRFFAE
LLSVGLFGLREGLNVLAGQLSLLTVGDKEEHNNLTILTSFCRHCGDDYAGLLPRKIRLLA
EKHGVEIPRSTLLPPERQKGCRNLLGDYYQSLCKHLLTDHKELKNIERQNRRILQTKGEL
SAERKEKFDAMLQAYQKLLSNTAIFADLLDEDLPELPEDEIKRDDDTGFDIFNPETSAEF
QYTGDATLFEDEDARSFYETLPDLKAFIPGICYKDSEQAAAKEDSKDDLSCLDEDMENLQ
IEDVEREMETEKQIAEVESKEAEQQEQEEVLQDYGMLPDADEEDADTGSLMKMQYEAYIQ
TLPNCVNKDLIDKAAVEFCMNFNTKSNRKKLVRALFTVHRTRYDLLPFYSRFVATLYPCM
PDVAGDLVQLLKGDFKWHVRKKDQINIESKLKTVRFIGELVKFKLFPKSEALHCLKMLMF
DFSHHNIEMACSLLDTCGRFLYRSQDSHHRTKIYLDVMMRKKSALHLESRYTTMIENAFY
YSNPPETQQSAQKVRPPMHEYIRKLLYKDLSKVTTEKVLRQMRRLPWDDPEIAFYATKCL
IAVWNVRYNSIHCAANLLAGLAPYHEHIAIQVVDGVLEDIRLGMEVNHPKYNQRRVSCVK
YLGELYNYRMLESAVVFKTLYSFITFGVVMDAEGGASPLDPPEHLFRIRLVCVLLETCGT
YFDKGSSKKKLDCFLAYFQRYYWFKRSNAIYTEARPFPVDVENLMIDTMECVRPKMKLHP
NYEEACKSVEELENEYKQKVASVLTIIETDQEGSASETEEGLGTIQEGEEYGEDLSLSGV
DESETSQEDTSQRSMEDQGEDEEEGGGGSNEEEEEDVMESAGENEEEDQLTIMKGGPKHI
KCSEDEDFMTAFDKMMTENIQARTNESLKVPQLDIAVPMNLKDKNKKTVSVHLYPMKEEE
PPKIEDRSIEFVLMTRRGNKQHFTNLNVPISEEFATKYREREQAEKAEKEKMKQVVLGIH
ERQEEEDYQEMIASLNRVMPVNTNRERRVRYQHPKGAPDADLIFGSKKR
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atgagtgattcccagggttccggagagaaaggtcctgccagcaagtcacggggacctgag
aaatctgcctccagtggaggggcaccacgggggtcagacagaccatcctcaggaaagcct
cggccagattcctccagacggtatgatgatagaccccaaaagtccccatacaaaacttcc
acctcatcaccctcaaagggaaacaattctgcatttgatatcaaaaaaggaggaagcaaa
agtcagactgactcgggatatggtgagaggggaggaaactctaaaaggggaggtgactct
agatcaagtggtggtgcaaggggagacaaatggtcacagagaggagagaaagaaggctcc
aaaccactgccaaagggaactgctgtagacaagagtggaaggaaaattgggaaggaggag
agggcttcagatgaaaggggagacaaacgggaagagaagaaaccgtccaaagaagtgaag
tctgcctcagagttagaggagcagtggcagactgaggacgaaaagaagaggatggcagag
gaggaggccaagaggatcgaagaggagaggatcaagaaggaggaagaggagcagaggagg
aaagaagaagagcagaaaaggttgctggaggaggaaattaaaactgtaaaggattaccaa
caggagtgcctggagaagtacgagaccaagaagaagttacgggaacagaaccaagaggca
gcagaaaatcgaccggatgagtccttcttcagtaggttggactccaacctcaagaagaac
actgcctttgtgaagaaactgaaaaatctaacagaatcccaaaaggaaagcttaactaag
gacttcaatgggctaaacctcaacaagtacattggtgaagcagcggcagccattactgag
gccaagcttaagatgtcagacttagcgtgcggggtacacgtctgttgtctgttctaccag
aggtatggcgagttctccaactacctgatggacaactggcagaagtacctgctcagcaag
aaggatgaaaagataaacaaccccagtaagtaccgggtggacctgcgcttctttgcggag
ctgctgtcggtggggctgtttggcctgagggaggggctgaacgtcctggccggtcagctg
agcctcctgacggtcggcgacaaggaggaacacaacaacctgaccatcctgaccagcttc
tgtcggcactgtggggacgactacgccgggctgctgccccgcaaaatcagattgttggca
gaaaaacatggagttgaaattccacggagcacattacttccgccggagagacagaagggc
tgtcgtaacttgttgggcgattactaccagtccctgtgtaagcatctactgactgaccac
aaggaactcaagaacatcgagagacaaaacaggcgcattctacagaccaaaggggagtta
agcgcggagagaaaggagaaatttgatgccatgttacaggcctaccagaaactcctctcc
aacaccgccatctttgctgatctgttggatgaagatctacctgagctaccagaggatgaa
atcaagagagacgatgacacaggtttcgacattttcaatccagaaacaagtgcagagttc
cagtatacaggggacgcaactctgtttgaagacgaggatgctcggtccttctacgagact
ctgccagacctaaaagccttcatccctgggatttgttataaggacagtgaacaggcagca
gccaaagaggacagcaaggacgacctgtcttgtctggatgaagacatggagaatctacag
atagaagatgtggagagagagatggaaacagagaagcagattgctgaagtagagagcaag
gaggcagagcagcaggaacaggaagaggtgctgcaggattatgggatgcttcctgatgct
gatgaggaggatgcagatactgggagtttgatgaagatgcagtatgaagcctacatccag
acattaccaaattgtgtaaacaaggacctcattgacaaggcagcagtggagttttgtatg
aactttaacacaaagagcaacaggaagaagttggtgagggctctgttcacggtccatcgc
accaggtacgacctactgccgttttactcccgattcgtggccacgctgtatccgtgtatg
cctgatgtggcaggggatctggtgcagctcctcaaaggagacttcaaatggcatgtacgc
aagaaggaccaaatcaatattgagtccaagttgaagactgtcaggtttataggggaactt
gtcaagtttaagctgtttcccaagtctgaggctctccactgcttgaagatgttgatgttt
gacttttctcaccacaacattgagatggcgtgttccttactggacacttgtggccgcttc
ctgtacagatcccaggactcacaccacagaaccaaaatctacctggatgtgatgatgagg
aagaagtcggccctacacctggagagccgctacaccaccatgatagagaacgctttctac
tacagcaaccccccggagacccaacagtccgcccagaaggtccgtccccccatgcacgag
tacatccgtaaactgctgtacaaggacctgtctaaagtcaccacagagaaggttttgcga
cagatgaggcggctgccctgggacgatccagagattgcattctatgccaccaagtgtctg
attgcggtctggaacgttcgctacaactccatccattgtgctgccaacctcttggctggg
ctggctccctatcatgaacatattgccatccaggtggtggatggggttctggaagacatc
agactgggaatggaggtgaaccaccctaagtacaaccagcgacgagttagctgtgtgaag
tacctgggggagctgtataactaccgcatgctggagtccgccgtcgtcttcaaaacgctc
tactccttcatcacctttggtgtcgtgatggacgcagagggaggggcctcccccctggat
ccccccgagcacctgttcaggatccgcctggtctgtgtactcctggagacctgtggtacc
tactttgacaaaggctccagtaaaaagaaactagactgcttcctcgcctatttccagcgg
tactactggttcaagagaagcaatgcgatctacacggaggcccgcccctttccagtggac
gtggagaatctgatgattgacaccatggagtgtgtccgccccaaaatgaagctccaccca
aactacgaggaggcgtgtaaatccgtggaggaactagaaaacgagtacaaacagaaagtg
gcctcggtgttgaccatcatcgagactgaccaggagggtagtgctagtgaaactgaggag
ggactggggacaatccaggagggcgaggaatacggagaggatctaagtttgagtggagtg
gatgagagtgagacaagtcaggaggacacgagccagaggagtatggaggatcagggtgag
gatgaggaggagggaggaggaggcagtaatgaggaagaggaggaagatgtgatggaaagt
gctggggagaatgaagaggaagaccagttgacaatcatgaagggagggcctaaacacatc
aagtgtagtgaggatgaagacttcatgactgcttttgataagatgatgacagagaacatt
caggccaggaccaatgaatccctgaaggtgccccagctagacattgctgtccccatgaac
ctgaaggacaaaaacaagaaaacagtgagcgttcatctgtatcccatgaaggaggaggag
ccccccaagatagaggacaggtccatcgagtttgtgctgatgaccagacgaggaaataaa
caacatttcacaaatttgaatgtaccaatatcggaggagtttgccactaagtacagagag
cgagaacaggcagaaaaagctgagaaggagaaaatgaagcaagtggtccttggaatccat
gaaagacaggaagaggaagattaccaagagatgatagcctccctgaatcgtgtgatgccc
gtgaacacgaaccgagagaggagagtaaggtaccagcaccctaagggagccccggacgct
gacctcatctttggatccaaaaaaagatga
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