Crassostrea virginica (eastern oyster): 111108235
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Entry
111108235 CDS
T09197
Name
(RefSeq) exosome complex component MTR3-like
KO
K12587
exosome complex component MTR3
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111108235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111108235
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
111108235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
Motif
Other DBs
NCBI-GeneID:
111108235
NCBI-ProteinID:
XP_022299694
UniProt:
A0A8B8BAC7
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Position
1:complement(58283369..58299599)
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AA seq
494 aa
AA seq
DB search
MNCRLGLDWIACVVQLVGAIFFTIGFSTKYWATSDNSVNAGLFTTCDGGYCYDTHVFYHG
KSEKATIMGAAVLQIFTLCGVIFVLLLMLLYMCGLFNERSVSRGAAITAFATALFGFIGV
IMYGSAMSSLQYSLSWSCAFVIIGLIVDIAAGICIYIGGQQWEETQKKQRKRELFPPIKS
SRLDPRLDPRIPNSSTGVKNNSSKLFNPKASPQLSRKFRNMPTDSRRITGPEESFDPSVL
LVNREKTKEAVFRKGKRKDGRKAEQVRPVFLKAGVISQARGSAYIEQNETKVMCAVYGPR
EVMKKEEFSMKGQLTCEFKFATFSCRVRRQYQQDNEEKDYSSQLQDALEPAVCLHKFPKA
QVNVYITVLQNDGCALAASLTCASVALANAGIEMYDLVVGCSARITPSEVFIDPTETEDY
NPENDNETGNGSVTVGLLPSLNQVSAVTSRGEVEFQLLNKGTKQCIDVCQKLYPVLQQAV
AKAVEDRLSSDHVT
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgaactgccgcttagggttagactggatcgcctgcgtggtacagttggtgggtgccatc
tttttcacgatcggattctccaccaaatactgggccaccagcgacaattccgtcaacgca
ggactgttcactacctgtgatggtggctactgttacgacacgcacgtgttctaccatgga
aagtcagagaaagcgacgatcatgggagcggcggtgctacagatcttcaccctgtgtggg
gtcatcttcgtcctcctcctcatgctcctctacatgtgtggtctgttcaacgagcgctcg
gtatcccggggagccgctatcaccgccttcgccacagctttgttcgggtttattggggtc
atcatgtacggttccgccatgtcatcactacagtacagcctgagttggtcgtgtgcgttc
gtgataatcggcctcattgtggacattgccgccggaatttgcatttacatcggcggacaa
cagtgggaggaaactcagaaaaaacagcggaaaagagaactgtttccgcctatcaaatcc
tcgcgtctcgatccgcgactggatcctcggatacccaatagttctacaggagtaaaaaat
aactcctccaaactcttcaatcctaaagccagtccgcaactctccagaaagtttcggaac
atgcctacagactcaagacgaataacaggccctgaagagtcatttgatccatcagtttta
cttgtgaatagagagaaaacaaaggaggcagttttcagaaagggaaaacgaaaggatgga
agaaaagcagaacaagtcagacctgtctttctcaaagcaggggtcataagtcaagcccga
ggttcagcatacattgaacaaaacgaaacaaaagtaatgtgtgctgtatatggaccaaga
gaagtaatgaaaaaagaggagtttagcatgaaaggtcagctgacctgcgagtttaagttt
gcaacgttttcttgtcgagtgcgccggcagtatcagcaggacaatgaagagaaagactac
agcagtcaactacaggacgccctggagcctgctgtgtgcctgcataaatttccaaaggca
caagtgaatgtgtacataacagtgttacaaaacgatggctgtgctttggcagcctctcta
acctgtgcctcagtggccttggccaatgcagggatcgagatgtatgatctggtggtagga
tgttcagcaaggataactccctcagaagtgtttattgacccaactgaaacagaagattac
aacccagagaatgataatgagactgggaacggcagtgtgacagtgggactcttgccctca
ctgaaccaagtgtcagctgtcacctccagaggcgaggtggaattccagctactcaataag
ggcacaaaacaatgtattgatgtttgtcagaaattgtatccagttttacaacaagcagtg
gctaaagcagttgaagacaggctttccagtgatcatgtgacatga
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