Crassostrea virginica (eastern oyster): 111108289
Help
Entry
111108289 CDS
T09197
Name
(RefSeq) uncharacterized protein LOC111108289
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111108289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111108289
03400 DNA repair and recombination proteins [BR:
cvn03400
]
111108289
Enzymes [BR:
cvn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
111108289
Messenger RNA biogenesis [BR:
cvn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
111108289
DNA repair and recombination proteins [BR:
cvn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
111108289
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Mg_chelatase
Motif
Other DBs
NCBI-GeneID:
111108289
NCBI-ProteinID:
XP_022299779
UniProt:
A0A8B8BAL3
LinkDB
All DBs
Position
8:complement(1626012..1627902)
Genome browser
AA seq
440 aa
AA seq
DB search
MELTIEKENEIKTRFNVECLRENQKVGLRAVCSGHDVFVGTKTGSGKSMIYECIPVILPD
AIVMIVAPLLSIMKEQTERLRSLGFNATFIGKDSNEEEGIIRGLYNFVFGSPETLVGEKK
WRDMLSSYGERLKLLVVDEAHTVVSWGQGKEHDAFREMFSHIGELRAIRSDVPIAALTAT
SAPSQRRKIMKSLCFRQSSVIISESPDRENIKITSLCIPNNCEIEDAFGWLITEFNKQKE
KLPRHIIFSESISDVAKLYAIFRKRVGKSCMFEMFHSKTVESKKESIRADMSKKGEIRIL
MCTNSAGMGVNFADVHNIIHYGLPREMDVLVQQMGRAGRDGVFSNELIIYKCHKGHLKQV
EDELVRMVKDTKCRRQVLCSSYGTNMKKVEPLHMCCDICEKLCKCDNTNCPETHPALQFK
MVGMESESMKRSVNDREKLL
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atggaattgacaattgagaaagaaaacgagataaaaacgaggttcaacgtggagtgcttg
cgagaaaaccagaaggtaggattacgagctgtgtgttctgggcacgatgtctttgtgggc
actaaaacaggcagcgggaagtcgatgatttacgagtgtatccccgttatcctacccgat
gccattgttatgatagttgctcctcttctctcgattatgaaagaacagactgaaagacta
cgtagtcttggttttaatgccacatttataggcaaggactcgaacgaagaagaaggaata
atcagaggattgtacaactttgtgtttgggagtccagaaacattggtaggcgagaaaaaa
tggagggatatgctgtccagttacggcgaacgattgaagctgctggtggtagatgaagct
cacactgtcgtctcttggggccagggtaaagaacatgatgccttcagggagatgttttca
cacataggagaactgcgtgctattcgctccgatgttcccatagcagccttgactgcaact
tcagctccctcacaacgaagaaaaattatgaagagtctgtgttttcgacaatcttcagtc
atcataagtgaatctcccgatagggaaaacattaagattacatctttatgtatacctaat
aactgtgaaattgaggacgcatttggttggctaattacagaattcaacaaacagaaagaa
aaacttccaagacatattatattttcagaatccatcagtgatgtcgctaaactgtatgct
atttttcgaaaaagagtagggaaaagttgtatgtttgaaatgttccacagtaagacagtt
gaaagcaaaaaagaaagcattagagcagatatgtcgaagaagggggaaatcagaattctg
atgtgtacaaattctgcaggaatgggtgtgaactttgcagatgtacataacatcatacac
tacggattgccaagggagatggatgttcttgtgcaacaaatgggaagagcaggaagagat
ggagtgttttcaaatgaactgatcatttacaaatgtcataagggacacctaaaacaagta
gaagatgaacttgtccgaatggtaaaagacacgaaatgtagacgtcaagtcctgtgttct
tcttatggaacaaatatgaagaaagtagaaccactacacatgtgttgcgatatatgcgag
aaattatgtaaatgtgacaatacaaattgtcccgagacacatcctgcattacagtttaaa
atggttggtatggaatcagaatccatgaaaagatcagtgaatgatagggaaaaactgctg
tga
DBGET
integrated database retrieval system
