Crassostrea virginica (eastern oyster): 111108600
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Entry
111108600 CDS
T09197
Name
(RefSeq) stabilin-2-like
KO
K19013
stabilin-2
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
111108600
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cvn00536
]
111108600
Glycosaminoglycan binding proteins [BR:
cvn00536
]
Hyaluronan
Cell surface receptors
111108600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fasciclin
EGF_3
cEGF
EGF_STAB1-2
EGF_Teneurin
EGF
FXa_inhibition
Motif
Other DBs
NCBI-GeneID:
111108600
NCBI-ProteinID:
XP_022300291
UniProt:
A0A8B8BBC6
LinkDB
All DBs
Position
8:complement(49243635..49267348)
Genome browser
AA seq
1617 aa
AA seq
DB search
MLFNMNVLNGISLVIIIQGLFYALPVDSIDFCKMNKINIQRFETECVLCSKNSHTECPRN
ATKVTSDNGLQTCQLELNMGNETNPRIIKMAGCSHTCLERIPEPYCCEGYYGPNCIECPK
FNWGICNERGTCNDTITGSGECECEANFTGFACEKCSQSDVYGENCNETCDCVNGECDSG
FRGSGNCDCFSGWGGDRCAQEISGCDYKNCSANSRCVQVEGANYTYCSCNQGYERDINAT
EHTCNPVDLCANGKHKCNENATCTFSGPSMYNCSCLEGFRGDGFVCDPIDPCRDFYGGCN
FTTSICTYKSPGKRDCVCKAGYELSSNQTCELIDLCSRNSSLCDKNADCVMNGPLEHICI
CREGYASAGDVCINNLFGMLEDIHNNDPDLASKMTWSIKLVENIYHEEFRYHGPFTVFLP
TDFGFRTIYRKMDIDEFLTDRDTASQILRQHIILGKWTMENLTRMNTFYTLQGKAAEIQI
KSRGEITYRFRLSGSRSKSSVIKHDLTASNGIIHVVQKLLTNDADVEGDTSETIFTLLKD
SKRYSIMESLIEKAGLQSEFERDNITVFAASSSAWNELPGGVMDYLQSDEGRATLKLILK
HQIVNETIEVADLINRATIQTLSRAVVPILITTQGQIRLDIGANIIQTDIPAKNGLLFHI
DKVLLPMERDEILPRICGYLNTTELEQGYCGPCFSPLGCEKGVPTGQIDQCTLKKAMVNR
HPDTGKIKLWFTTSNGCRDTCNTTKTTPVCCPGYFGARCSMCPGEYNNPCSGKGKCEDGL
DGNGTCDCDEGFSGTACEQCSDSQKFGPGCNQTCTCVHGTCNNGPEGDGKCKSCYSKKVS
IFRRPVKYGGENCDLFSVPCNGGLYTKRCHIDATCIRQGLTFSCVCDPGYEGDGDTKCTP
INPCEKPKRGGCHREAICKMDGPGGNTCTCNEGWTGDGLYCYPGSECGDHLQCHEDATCR
SDPAHDSSLCWCNDGFHGNGTFCVPNDMCKFDNGGCHVKANCTPVAPGLNNCTCQRGYEG
DGVSCIPTINELIINHPDLTKLAAFLKHLGDDSILQYDLDRYTFFAPTDTAMDFLIRRRD
EDFFSDDDNVLGFINYHTVLGENRVEDLRASVNVIERFNTLSDGYFLHFKVDNGTVLLST
NNKFVITASIVKSNLVAANGYVHIIDRALEPELETNGLPTLEDFLETSTDTTEFGKWLKT
KGLVDEIMNMNQYTLFLPLDEKFEDEELSTPYITSDYLRYYVLPVIRLAESFDDQERVDT
VLGPRNPISLQVIGKKVFLNGERMIVQSNFLTDGGVVHKIAGYIHPNLHRCDVSNKTVAH
SDCVPCEIGHFICPTGYTLDSGTATKDCIYSSGVTSYRGCRSLCSREEKVAGCCAGFYGE
HCQACAGGSEFPCNDNGRCNDGLTGDGSCTCFPGYTGTSCQLCINSTDNSTSECARSCAY
HNGGCHENGTCHEYAGSVTCACPQGYIGDGHRCVRPCDENNGGCHIMAVCKERNDSSTEV
DCSCQGDYQGNGFLCTPIPSKLSSSETAGAVTGGLVGFLIVIVAIVILIITIHRRRHSET
FMKRERFGSNESFEKLHPTQSGEENYIALQPSPPSEVKFDNPMYCVKEQQLGDFQDD
NT seq
4854 nt
NT seq
+upstream
nt +downstream
nt
atgttattcaatatgaatgttttaaacggtatttcgttagtgattattattcaaggattg
ttttatgcattaccggttgactcaatagatttctgtaaaatgaacaaaatcaatattcaa
agatttgaaacagaatgtgttttatgttccaaaaattcgcataccgaatgtccccgaaat
gcaacaaaagtgacgtcagataatggtctccaaacctgtcagttggaactgaacatgggg
aatgagacgaatcccagaattatcaaaatggcgggatgttcgcacacgtgcctggagcga
atcccagaaccgtattgctgtgaaggatattacggccctaactgcattgagtgtcccaaa
ttcaactggggaatttgtaatgaaaggggaacttgcaatgacacgataactggaagcgga
gagtgcgaatgtgaagcaaatttcacaggatttgcttgtgagaaatgctcacagagtgac
gtatatggagaaaattgtaatgaaacctgtgattgtgtaaatggggaatgtgacagcgga
tttagaggatccgggaattgtgattgcttctccggatggggaggagaccggtgtgctcaa
gagatctctggttgtgactataagaactgcagcgccaactcgcgctgtgtacaggtagag
ggcgctaactacacttactgttcctgtaaccaaggctacgaacgggacatcaacgccacg
gagcacacctgcaaccctgtggatttgtgtgcaaatggcaaacataagtgtaacgaaaac
gccacctgtacctttagtgggccttcgatgtataactgctcttgtctagaggggttccga
ggagacgggtttgtgtgtgatccaatcgatccctgccgagacttctacgggggatgtaac
ttcaccacgtctatttgcacctataaatcgccaggaaagagggactgtgtatgcaaagct
ggttatgagctgtccagcaatcagacttgcgagctcatagacttatgttccagaaatagc
agtctttgtgataaaaacgccgactgtgttatgaatggaccccttgaacacatatgtata
tgccgcgagggatatgccagtgctggagatgtctgtatcaacaatctttttggtatgttg
gaggatatccataacaacgaccctgaccttgcttccaagatgacctggtccattaaactg
gtggagaacatctaccacgaggagttccggtaccacggtcccttcaccgttttcctcccc
accgacttcggtttccggaccatctacaggaaaatggacatagatgaattcctgaccgac
cgagatacggcaagccagattttacgacaacatatcattcttggcaaatggaccatggag
aacttgactcgtatgaacacattttacacactgcaagggaaagcggctgaaatccagatc
aaatcacgtggagagattacctatcggttcagactaagtggatccaggagcaagtcctcg
gtgataaaacacgacctcaccgcttccaatgggatcatccacgtggtgcagaaactgctg
acgaacgacgcggacgtggaaggagacacctcggaaacaatatttaccctgctaaaagac
tccaagcgttatagcatcatggaatccctaatcgagaaagccggcttgcagtctgaattt
gagcgggacaacatcacagtgttcgcggcgagtagcagcgcttggaatgagctgcctggc
ggtgtgatggattatctacagagtgacgaggggcgtgcgacattaaagttgatacttaaa
catcagattgtcaatgaaactatagaagtggcggatctcatcaaccgcgccacgattcag
accctcagtagagcagtggtacctatcctgattaccacacagggccagattcgattagac
ataggagccaacattatacagacagacattccagcaaagaatggcttgttatttcatatc
gacaaggtccttctcccgatggaacgggacgagatcttgccgagaatctgtggatatcta
aataccaccgaactggaacagggatattgtggaccatgcttttctccccttggatgtgag
aagggagtgcctacaggacagatagatcaatgtacgttgaaaaaagccatggtcaaccga
cacccggatacaggaaagataaagctctggttcacgacgagcaatggatgccgggatacc
tgtaacaccacaaaaacgactccggtatgttgcccgggatatttcggagccaggtgttca
atgtgtccaggtgaatacaataatccgtgctctgggaaaggaaagtgtgaggatggacta
gacggcaatggaacttgcgactgtgatgaaggtttctcgggaaccgcttgtgaacagtgt
tcagattcacagaaattcggaccaggatgcaaccagacttgcacatgcgtacatgggaca
tgcaataatggacccgagggtgacggtaaatgtaagtcgtgttatagtaaaaaggtttca
atttttcgaagaccagtgaaatatggtggagaaaattgtgatctcttttctgtgccctgc
aatggcggtctctataccaagagatgtcacatcgatgcgacctgcatccgacaaggactg
acgttcagctgtgtttgtgatccgggctatgaaggagatggagatactaaatgcacaccc
atcaacccatgcgaaaagccgaagaggggtggatgccatagagaggccatctgtaaaatg
gacggacctggcggaaacacgtgtacttgcaacgaaggctggacgggggacggtctatac
tgctaccccgggtcagagtgtggggaccatctgcagtgtcacgaggacgccacgtgtagg
agcgaccccgcccacgattcgtcgctttgttggtgtaatgacggttttcatggcaatgga
acattctgcgttccaaatgatatgtgtaaatttgacaacgggggatgtcatgtcaaggcg
aattgcacaccagtggcccctggtctaaataactgcacgtgccagagagggtacgaggga
gacggggtgtcctgtatacccaccatcaacgagctcatcatcaaccacccagacctgacc
aaactcgccgccttcctcaagcacctgggagatgacagcatcctgcagtatgaccttgac
cggtacaccttcttcgcccccaccgacaccgccatggacttcctgatcagacgaagggac
gaggacttcttctcagacgatgataatgttctaggttttatcaattatcatacagtcctg
ggagagaacagagtcgaagacttgcgcgcttctgtgaatgtcatcgaacggtttaataca
ttgtctgatggatattttcttcattttaaagtagacaatgggacggtccttttatctacc
aacaacaaatttgtgataactgccagcatcgtgaagagcaaccttgttgctgctaatgga
tacgtccacattattgacagggctcttgaacccgagctggaaacaaacggacttcctacc
ctagaggactttttggaaaccagcactgatactaccgaatttggaaaatggttaaagacc
aaaggactcgtggatgaaatcatgaacatgaatcaatatacattgtttctcccattggat
gaaaagtttgaagacgaggaactatcaaccccttacattactagcgactacctgcgttac
tacgtcttaccagtcattcgtctggccgagtcttttgacgaccaggaaagagtggacact
gttctaggaccaaggaacccaatcagcttacaggtcataggcaaaaaggttttcctgaac
ggcgagcgcatgattgtccagagtaactttctaacggatgggggagtggtccataagatt
gctgggtatattcacccgaatctccatagatgtgacgtcagtaacaaaacagtggcccat
agcgattgtgtgccttgcgaaattggacactttatctgtccgacaggatatacgctcgac
tccggaactgctaccaaggactgtatatattccagcggggttacttcatataggggctgc
agatctctctgttctagagaggaaaaggttgctggttgttgtgctggtttctatggtgaa
cattgtcaagcatgcgcgggtggctccgagtttccgtgtaacgacaatggacgttgtaat
gatggcctgactggcgacggatcgtgcacgtgcttcccaggatacaccggaacttcctgt
cagctgtgcattaacagtacagacaattctacttcagaatgcgccagatcttgtgcgtat
cacaatggtggttgtcatgagaatggaacctgtcatgagtatgccggaagtgtgacatgc
gcatgcccacagggttatattggtgacggacatcgatgtgtgagaccctgcgacgaaaat
aacggaggttgtcacatcatggctgtgtgcaaagaaaggaatgacagttctactgaggtg
gattgttcctgtcaaggggactatcaaggcaatggatttctttgtactccaataccctca
aaactttcttcaagtgaaacggctggtgccgtgacaggtggactcgttggttttctcatc
gtcatcgtcgctatcgtcatacttatcatcacaatacacaggcgacgacactcggaaact
tttatgaagagagagaggtttggcagtaatgagtcgtttgaaaagctccatccaactcaa
tccggagaggaaaattacatcgcattgcaaccgtctcccccatcggaagtcaagttcgac
aaccctatgtattgcgtcaaagaacaacaacttggcgattttcaggacgattaa
DBGET
integrated database retrieval system