Crassostrea virginica (eastern oyster): 111108767
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Entry
111108767 CDS
T09197
Name
(RefSeq) replication factor C subunit 1-like
KO
K10754
replication factor C subunit 1
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03030
DNA replication
cvn03410
Base excision repair
cvn03420
Nucleotide excision repair
cvn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
111108767
03410 Base excision repair
111108767
03420 Nucleotide excision repair
111108767
03430 Mismatch repair
111108767
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cvn03032
]
111108767
03400 DNA repair and recombination proteins [BR:
cvn03400
]
111108767
DNA replication proteins [BR:
cvn03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
111108767
DNA repair and recombination proteins [BR:
cvn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
111108767
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
BRCT_2
AAA_16
AAA_30
AAA_5
Rad17
RuvB_N
AAA_14
nSTAND3
AAA_33
AAA_19
Motif
Other DBs
NCBI-GeneID:
111108767
NCBI-ProteinID:
XP_022300540
UniProt:
A0A8B8BAT7
LinkDB
All DBs
Position
1:9513950..9535973
Genome browser
AA seq
1142 aa
AA seq
DB search
MLLTDVLKMDLRNFFSVKPSKKTNEGESCNKQEKEGKNHQDSKQKKVETSKSNASKTKST
RKTPQKGKTEMEKKKIFVIDSDSDSEFQKKSQNEQQQNVKNKSNGNIKKGKKAQQEDEGD
ADDDIKSKKGKRKRLQVSSEEEDEVVVSKHKRKSRRRLDSDSEGEEKEVKKKERKASGKK
SHIDVSDEEKPRKTTLDVFLRSPSPKKQVTATVKESKTETKQKTPVNPMDFLGGDSVKRS
ERTVAAKRTQEDVKKSSVAYDVEMHEDDDFQKTLDMADETKPKKMKAADKEETSCANSKP
SLASKLAAKVQSCDEGDVIPDTPVSKSQFTKISEKKESPKKEPLRKTTPKKSSPVKFTPK
KSPNFSSEAAATPKSEETSRSSAKASPTKVSPDTPSMARKGSTYRSYLNRDGPRALGSKE
IPEGGENCLESLTFVITGVLESMERDEAKSLIEKYGGKVTGSISKKTSYLVAGRDSGESK
LTKAKSFGTKQIDEDGLLNLIKTLPGKRSKYEIKAEEQIKKESSFSQKTKSETPIKSLAK
ESSQSSRKGSQEGGESLPSGQSSGTARPAESSLMWVDKYKPTQLKQIIGQTGDKSNAKKL
LHWLTNWHKSRAAGVKPQGKFFNKNDDGSGFRAALLSGPPGIGKTTTATLVCKEAGFSYV
ELNASDTRSKKSLKGEVAEALDNKTIVDFIGVTSSSTQGRKHCLLMDEVDGMAGNEDRGG
LQELVSLIKSSHIPIICMCNDRNNPKMRTLSNYCFDLRFQRPRVEQIKGAMMSVAFKEGL
KIPPPAMNEIILAANQDIRQVLHNLSMWTAGDKNLTYDQAKKDSGNAKKDFKLGPFDVCR
KVFVGGEETAGMTINDKSDLYFHDYNIAPLFVQENYIHVIPYAAKGNMGRHLSQLARAAD
SLCEGDLVDRCIRSNQSWNLLPTAAMFASVIPGEHMRGSLPQMVGFPSWLGKNSTTGKTD
RILQELRTHMSLPTSANKLSLNLDYLPFLRKFLTAPLVLKENDGIAEVIDLMDKYDIIKE
DFDNILEVTKWPNSDDPMSLLSSKTKAAFTRTYNKEVHLTPYATGTLTKKGRGGGAPVGE
DYGLEGEDEGEETAVVPESDEENSNDLELDSMIKAKKPKGKEKETKQTSSKGKGKGKGKG
KS
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgttactaacggatgttttgaagatggatctaaggaatttttttagtgtaaaacctagc
aagaaaacgaatgaaggagaatcttgtaacaaacaagagaaggaaggaaaaaatcaccaa
gacagtaagcagaagaaagtagaaacctccaagagtaatgcctctaaaaccaagtctaca
agaaaaactccacagaaaggcaaaacagaaatggaaaaaaagaaaatttttgtgatagac
agtgactcagattcagaatttcagaaaaaatcacagaatgaacagcaacaaaatgttaag
aataaatcaaatggcaacattaagaaaggaaagaaagcccagcaggaagatgaaggtgat
gctgatgatgatatcaaaagcaagaagggcaagaggaaacgactgcaggtaagcagtgaa
gaagaagatgaagtcgtagtctctaaacataaacggaaatccagaagaagacttgactcc
gactcagaaggagaagagaaagaagtgaaaaagaaagagagaaaagctagtgggaaaaag
tcacatatagatgtctcagatgaagaaaaaccaagaaaaacaacattggatgtatttttg
agatctccaagtcctaaaaagcaggttactgcgacagttaaagaatcaaaaacagaaacc
aaacagaagactccagtgaatcctatggattttttgggaggagattcagtgaaacgctca
gaaagaacagtggcagctaaacgtactcaggaagatgtcaaaaagtcttctgtggcctat
gatgtagagatgcatgaagatgatgatttccagaaaactttagacatggctgacgaaact
aaacccaaaaagatgaaagctgctgataaggaagaaacatcatgtgcaaacagtaaacca
agtctagcaagcaaattggcagcaaaagtccaatcctgtgatgagggggatgtgattcca
gacacgcctgtttcaaagagtcagtttacaaagatatcagagaaaaaagaatcgccgaag
aaagaaccactcagaaaaaccacccccaagaaatcttctcctgtgaagttcaccccaaag
aaatctccaaacttctctagtgaagcagcagccacacccaagtctgaagaaaccagcaga
tcgtccgcaaaagccagtcctaccaaagtatcccctgacaccccttccatggctaggaag
ggcagcacctatcgcagctacctgaaccgagatggaccccgggcactgggatccaaggag
attccagaggggggagagaactgtttggagtccttgacctttgtcattacaggggtgttg
gaatccatggagagagacgaggccaagagtctgatagagaagtacggaggaaaagtcaca
gggagcatcagcaagaagaccagctacctggtggcagggagggactcgggggaaagcaaa
ctgaccaaggccaaaagctttggaacaaaacagattgatgaggatgggttactgaactta
ataaaaacacttcctggaaagagatccaagtacgaaattaaagcagaggagcagataaaa
aaggaatcgtctttctctcagaagactaagtcggagactcccataaagtcattagcaaag
gaatcctcccagtctagtcgcaaaggttcccaggagggtggggagtcacttcccagtggt
caatcaagcggaacagcgcggccagccgagagcagcctgatgtgggtagataagtacaag
cccactcagttgaaacagatcattggacaaactggggataagagcaacgccaagaagctg
cttcattggttgacaaactggcacaagagtcgggcagcaggggtcaagccgcaaggtaaa
tttttcaacaaaaatgatgatggctcaggattccgagcggccttactctctggcccccca
ggaattggaaagaccaccacagcgacccttgtttgtaaggaagctggattttcttatgta
gaactgaatgcatcagatacaaggtcaaagaagagtttgaaaggagaagtagctgaggca
ttggataataaaacaatagtggatttcataggtgttactagcagcagcacacaaggcagg
aagcactgtctcctcatggatgaagtggatggaatggcgggcaatgaggaccgaggaggg
ctgcaggagctagtgtccctcatcaagtcctcacacatccccatcatctgcatgtgtaat
gaccggaacaaccccaagatgaggacactctccaactactgctttgatctccgatttcag
cgacctcgtgtggaacagatcaagggtgctatgatgtccgtggcattcaaagagggcctg
aaaattccacccccagcaatgaatgaaattattttggcagccaaccaagatattcgccag
gttttacataatttatccatgtggactgctggggataaaaatctgacatacgaccaggcc
aagaaggattctgggaatgctaagaaggactttaaactgggtccttttgacgtgtgtcgg
aaagtgtttgttggtggggaggaaactgctgggatgaccatcaatgataaatctgatctg
tactttcatgattacaacattgctcccctctttgtccaagaaaactacatccatgttatt
ccatatgcagcaaaaggcaacatgggtcggcatttgtcccagctggcccgggcagcagac
agtctgtgtgagggtgacctggtggacaggtgtattcgttccaaccagtcctggaacctg
ctgcctacggctgcaatgtttgccagtgtgatccctggggagcacatgaggggcagtctg
ccacagatggtggggtttcccagctggctggggaagaattctaccacagggaagacggac
cgcatcctacaggaactccgaacacacatgtccctaccgacttcagcaaataagttgagt
ttaaacctggattatctgcccttcttacgaaagtttctgacagcacccttggtgctcaaa
gagaacgatggaatcgccgaggttattgacctgatggacaagtatgacatcatcaaggag
gactttgacaatattctggaggtcacaaaatggccaaatagcgatgatccaatgtctttg
ctcagttcaaaaacaaaagctgcattcacacgaacttacaacaaggaggtccatctgacc
ccgtatgccacagggaccctgaccaagaaaggacgagggggtggagcacctgtgggtgag
gactatggtttggagggagaggatgaaggggaggagacagcagtggtcccagaaagtgac
gaggaaaatagcaacgatctggagttagactccatgattaaggcaaaaaaaccaaaaggg
aaggaaaaggagaccaagcagacatcatcaaaggggaaagggaaggggaaaggaaagggg
aaaagctga
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integrated database retrieval system
