Crassostrea virginica (eastern oyster): 111108816
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Entry
111108816 CDS
T09197
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cvn03016
]
111108816
Enzymes [BR:
cvn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
111108816
Transfer RNA biogenesis [BR:
cvn03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
111108816
Prokaryotic type
tRNA splicing ligases
111108816
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
111108816
NCBI-ProteinID:
XP_022300610
UniProt:
A0A8B8BB10
LinkDB
All DBs
Position
8:16394898..16401068
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AA seq
358 aa
AA seq
DB search
MSADSPRGQVDKIGCTRARSAPPYSDLLTNKLGYAWAEDKEHCQEYGRMLQADPGKVSSR
AKKRGLPQLGTLGARNHYAEIQVVNEIYNKFAAKKMGIEFKGQVCVMIHCGSRGLGHQVA
TGKSDSLVAMEKAMKRDNINVNDRQLACARINSPEGQDYLKGMAAAANYAWVNRSSMTFL
CRQAFAKMFDSTPDDLDMFMIYDVSHNIAKVEEHFVDGKQKTLMVHRKGSTRAFPPHHPL
IPVDYQLTGQPVLIGGTMGTCSYVLTGTQQGMEETYGTTCHGAGRALSRAKSRRNLDYTE
VLSALEEKGIIIRVASPKLVMEEAPESYKKVTDIVDTCHLAGISRKAIKLRPIAVIKG
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccgactcgccaagaggtcaagtagataaaatcgggtgtacacgcgcacggagt
gctcccccctattctgacctgcttactaacaagttaggttatgcgtgggcggaggacaag
gagcattgtcaggagtatgggaggatgctacaggctgaccctgggaaggtcagcagtcgg
gccaagaaaagggggctaccccagttgggaactctgggagctaggaaccattatgcagag
atacaggtggtgaatgagatctacaacaagtttgctgccaagaagatgggtatagagttc
aagggtcaggtatgtgtgatgattcattgtggcagcagaggactgggccaccaggtggcc
acaggtaaatcagattcattggttgctatggagaaggctatgaagcgggacaatataaat
gtgaatgaccggcagttggcctgtgcaagaattaactcccctgaaggacaggactacctt
aaaggcatggcagcagctgccaactatgcctgggttaatcgctcaagcatgacattcctc
tgtagacaggcttttgccaagatgtttgacagcacaccagatgaccttgacatgtttatg
atttatgatgtgtcgcacaacattgcaaaggtggaggaacattttgttgatgggaaacag
aagacgttaatggtccacagaaaaggctccacaagggcgttccctccccaccaccccctg
atacctgtggattaccagctgacaggacaacctgttttaattggaggaaccatgggaaca
tgtagctatgtcctgaccggtacacagcagggtatggaggagacttacggtaccacatgc
catggggcgggccgagcactatctcgagccaagtcacggcgtaatctggactacacagaa
gtgctcagtgcattggaggagaaaggaatcattatcagagtagcctcccctaagctggtc
atggaagaggcccctgaatcctacaaaaaagtaacagatattgtggatacatgtcacctt
gccggcatcagtcgtaaagccattaaacttcgtccaatcgctgtcatcaagggctaa
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